Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0088 ATGAAACTCGAAAACTCCAATTCCAACGGCCAGATCTCCTTCCCCGCCGCCGTCGATGTTACTCCGCTGCATAACTCCGACGACACCGATGAAGCATTCGTGCCGCCGCTGAATTTCGCGATGGTTGATAATGGTATTTTCAGGTCTGGATTTCCAGATTCTGCGAATTTCGGATTCATGAAATCTCTTCGTCTACGTTCCGTAATATGTTTGTGCCCTGAACCCTATCCTGAAACCACCGCGGAGTTTTTGAAGGCTAATGGAATTAGGCTTTATCAATTTGGTATTGATGGATGTAAGGAACCCTTTGTCAACATTCCAAATGATAAGATTCGCGAAGCTTTGAGAGTAGTGCTCGATGTTAGGAACCATCCCGTGCTGATTCATTGCAAACGAGGGAAGCATCGCACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGGTGGTGTCTATCATCAATTTTTGATGAGTATCAAAGATTTGCAGCTGCTAAAGCTAGAGTCTCAGACCAGAGGTTCATTGAATTGTTTGATATTTCCAGTTTGAAGCACAACCCACTGTCATTTTCATGCTCAAGGAAATAG 588 0.4422 MKLENSNSNGQISFPAAVDVTPLHNSDDTDEAFVPPLNFAMVDNGIFRSGFPDSANFGFMKSLRLRSVICLCPEPYPETTAEFLKANGIRLYQFGIDGCKEPFVNIPNDKIREALRVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQRWCLSSIFDEYQRFAAAKARVSDQRFIELFDISSLKHNPLSFSCSRK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0088 195 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 33 180 IPR029021 -
Psa4g0088 195 Pfam Tyrosine phosphatase family 34 187 IPR004861 -
Psa4g0088 195 CDD PFA-DSP_Siw14 33 179 - -
Psa4g0088 195 PANTHER TYROSINE-PROTEIN PHOSPHATASE 24 193 - -
Psa4g0088 195 ProSiteProfiles Dual specificity protein phosphatase domain profile. 38 192 IPR020422 GO:0006470|GO:0008138
Psa4g0088 195 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 24 193 - -
Psa4g0088 195 ProSitePatterns Tyrosine specific protein phosphatases active site. 128 138 IPR016130 GO:0016311|GO:0016791
Psa4g0088 195 Gene3D Protein tyrosine phosphatase superfamily 32 182 IPR029021 -
Psa4g0088 195 PRINTS Plant and fungal dual specificity phosphatase signature 33 50 IPR020428 GO:0016791
Psa4g0088 195 PRINTS Plant and fungal dual specificity phosphatase signature 70 83 IPR020428 GO:0016791
Psa4g0088 195 PRINTS Plant and fungal dual specificity phosphatase signature 89 103 IPR020428 GO:0016791
Psa4g0088 195 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0088 Psa-Chr4 4109085 4111953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0088 31 195 Protein tyrosine phosphatase (PTP) family AT4G03960 76.364 2.87e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0088 K18045 - gmx:100785520 337.421