Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0075 ATGGGGAAATCTGGGGGTAGAAGGAAGAAGGGTGGTGCGGTTGTTGTTGACAATTCAGTTTCTGCACAAACTCCGAATGGTGGTGTTGAGTTGGATTCATCAATTTTTTTGAAAAAGGCACATGAAATGAAGGAAGAAGGGAATAGGAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTAAACTCACACCCAAAATTCATCCTGACAGAGCTGTTTTTCACAGCAATAGGGCTGCTTGTTTGATGCAAATGAAACCTATTGATTATGAATCTGTTATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCTTTGTTTGTTCGGGCTCTTCTCCGTAGGGCTCGGGCGTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTGCAGGATGTGCAGTTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTTCTCAGAGATTGAGGGCTGCGTTTGGGCCTCGTCAGGAGGCCCAGCAGGATCTTCATAGTCGGCCTTCTCCTGCTGCTCTTGGGGCATCGGCTGTCCGTGGTGCCCCTATTGCGGGGTTAGGTCCATGTTTGCCTGCACGGCCTGGATCGAAGAAGGGGGTGAGTTCTGCAGTTGGGGCTGTTGTTTCTCCGAATAACAAGGTTGACAAGTCTCAAAATGTTTTACTTACTGCTGAAAATGGCTCGGAGACGACTAAGCGTCAGCAGAATGTTGCGTTGAAGCCTTTAAGTAATGGTCCTGCAGTGCAACCTAACTCGAAAAATGTGAACCAGAAGGGGATTAATGGGCAGCTGTCGGAGGTTGCGATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATCAGGCTTGCTCAGATGCCGGTGAAATGTAGTTTCAGAGTACTGAGAGATGTGGTAAGCAAAAGATTTCCTTCTTCGAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACGTCTACGGATGAACTCAGATTGGCAGAGTCTTTTGTTGATAGCTATTTGCTGAAAGAGCCTGAATCAGATAAAAGTGATTCCATTTCGGTGCTGAGACTTCATATTGTTGAAGTTAGTCCGGAACAGGAGCCACCTTTGTTGGAAGAAGAGGAAGAAAAACTTGTTGAGAATGAAGTGGCCAAGGGAGATGAGAGTGGATCTCATTCTTCCCTTGGTGAATCTGTCCCTGAAGTTACGGAAGTTACCGAGGTTCCTGATATTGAGGTTGACAAGGTAGCTGCTAAGAAGGATGCTTCCAAGGAAAAGCCGGGAGCCACCGGAGATAATGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTCGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCGGATGCTCATATTGACTTGCACGAACTTGGGATGGAGCTTTGTTCTGAGGCACTTGAAGAAACAGTAACTAGTGAGGAAGCTCAAGATTTATTCGACAAGGCTGCTTCAAAATTCCAGGAGGTGGCAGCATTGGCATTCTTCAACTGGGGTAATGTTCACATGTGCGCGGCTAGAAAGCGGATTCCCTTAGATGAAACTGCTGGAAAAGAGGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGAAAAGTATTCTTTGGCAAGAGAAAAATATGAGGAAGCACTCTTGATCAAACCAGATTTCTACGAGGGGCTGTTGGCTCTAGGCCAGCAACAATTTGAAATGGCCAAACTCCATTGGTCTTTTGCAATTGCTAAGAAGATAGATTTAACAAGCTGGGATCCAACGGAAACTCTTGAATTGTTTAATAGTGCGGAGGAGAAGATGAAAGCCGCAACAAATATGTGGGAGAAGTTGGAGGAACAGAGAGCAAAGGAGCTAAAAGACCCAAATGCAACTAAGAAAGAAGAATTATTGAGAAGAAGGAAGAAACATGGCAGTACTACCGAAGGCGAGGCTTCTGGTGTTGGCGGTCAGAGTGAGATATCTGCCGAAGAAGCCGCTGAGCAAGCAGTGGTCATGAGATCACAGATTCATCTCTTTTGGGGAAATATGCTTTTCGAAAAATCCCAAGTTGAATGCAAATTAGGAATGGATGGTTGGAAGAAAAACCTAGATGCTGCAACAGAAAGGTTCAAGCTTGCAGGAGCTTCTGAGGCAGATATTTCAATGGTTCTAAAGAATCATTCTTCTAATGGTGATGCAAAAGGTGATGATAAAAAGGTTCAGAGTACACTGCCCAACAAGACGGGTGAACTAGAGATCAATAAGGCAAATCAAGAATGA 2316 0.4452 MGKSGGRRKKGGAVVVDNSVSAQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALKLTPKIHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPLFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDISQRLRAAFGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPGSKKGVSSAVGAVVSPNNKVDKSQNVLLTAENGSETTKRQQNVALKPLSNGPAVQPNSKNVNQKGINGQLSEVAIRWRPLKLVYDHDIRLAQMPVKCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESFVDSYLLKEPESDKSDSISVLRLHIVEVSPEQEPPLLEEEEEKLVENEVAKGDESGSHSSLGESVPEVTEVTEVPDIEVDKVAAKKDASKEKPGATGDNECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDETAGKEVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTSWDPTETLELFNSAEEKMKAATNMWEKLEEQRAKELKDPNATKKEELLRRRKKHGSTTEGEASGVGGQSEISAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADISMVLKNHSSNGDAKGDDKKVQSTLPNKTGELEINKANQE* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0075 771 Coils Coil 612 632 - -
Psa4g0075 771 SMART PB1_new 278 370 IPR000270 GO:0005515
Psa4g0075 771 ProSiteProfiles PB1 domain profile. 278 370 IPR000270 GO:0005515
Psa4g0075 771 Gene3D - 280 348 - -
Psa4g0075 771 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Psa4g0075 771 PANTHER PROTEIN CLMP1 1 755 IPR044517 -
Psa4g0075 771 MobiDBLite consensus disorder prediction 386 410 - -
Psa4g0075 771 CDD PB1 281 367 - -
Psa4g0075 771 Gene3D Tetratricopeptide repeat domain 37 161 IPR011990 GO:0005515
Psa4g0075 771 PANTHER - 1 755 - -
Psa4g0075 771 SMART tpr_5 78 113 IPR019734 GO:0005515
Psa4g0075 771 SMART tpr_5 114 147 IPR019734 GO:0005515
Psa4g0075 771 SMART tpr_5 40 73 IPR019734 GO:0005515
Psa4g0075 771 SUPERFAMILY TPR-like 37 171 IPR011990 GO:0005515
Psa4g0075 771 MobiDBLite consensus disorder prediction 632 672 - -
Psa4g0075 771 MobiDBLite consensus disorder prediction 756 771 - -
Psa4g0075 771 Pfam PB1 domain 278 369 IPR000270 GO:0005515
Psa4g0075 771 MobiDBLite consensus disorder prediction 738 771 - -
Psa4g0075 771 SUPERFAMILY TPR-like 492 588 IPR011990 GO:0005515
Psa4g0075 771 SUPERFAMILY CAD & PB1 domains 276 342 - -
Psa4g0075 771 MobiDBLite consensus disorder prediction 632 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0075 Psa-Chr4 3737693 3741850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0075 40 158 Calmodulin-binding Proteins AT3G25230 30.769 7.75e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0075 - - gmx:100786963 1125.15