Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0066 ATGGCAATAGCAGGAGGAGCAGCAACATCATCACCAACCATAACCATGAGCTTGAGCAACAATACTCACGAAGATGGAACTTCTAACTCCAACGATAACAATATAATTACTAAAGCTACTACCACAACAACAACAGCTATAGTTGATGATGATCACGAGCATGACATGGTTATGCCAGGTTTTCGTTTCCATCCTACTGAAGAAGAACTTGTTGAATTCTACCTTCGCCGTAAGGTTGAGGGAAAGCGTTTCAACGTTGAGCTTATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCGGCGATTGGAGAGAAGGAATGGTACTTTTATGTGCCTCGAGATCGAAAGTATAGAAACGGTGATCGTCCTAATCGCGTAACAACTTCTGGTTATTGGAAAGCTACCGGAGCTGATAGGATGATTAGAACTGAAAATTTCCGATCAATTGGACTGAAGAAAACCCTAGTTTTCTATTCTGGTAAAGCTCCTAAAGGTATAAGAACTAGTTGGATTATGAACGAGTATCGCTTACCTCAACACGAAACCGAACGATATCAAAAGGGTGAGATATCGCTGTGTCGCGTATACAAGAGAGCTGGAGTAGAAGATCATCCTTCTCTCCCTCGTTGTCTTCCAATCGCAAGACCTTCCTCGATTCCATCGTCATCGAGAACCTCGCATTCTGAGAAGAACAAACAGAATGAAACACTGGGATTAGGATTTGTTGTTGGACAATCTTCAAAGGTAATTGATAATCAAATAGTTAATAAAATGGATGGAAACAATAATAGCAGCGGCGGCGGTGACTGTAATTCAGATCAAGTGACAACAGCTCTTGGTTTATCCAAATACAACCACAGTACTCCAACTTACAGTGCAGAAGAAGAAGAACAATTGATAATGATGCAACAACAGCAGCAGCAACAACAACAACAACCTAGGCAAGTAGTACAATATGCAGGAGGAAACTCAGTGTTAGTTTCTGCTTGTGGTGGTGGTGGTGCTATTTTCCCTGTCTCAGCTGCATCGGCGAGTTGTTCTACCATTGGTTCGACAAGTGCTGCAATGATGATGGATGATCTTAACAGGCTTGTGAGTTATCAGCAACAGCAATACTGTTACAATGTTCAAAACCATTCCAATCCAAATCCTAATCATTTGTCTACTTTGCTTATGCAACCAATGTCTCTACCGAATCAACTACCAACAACATTCTCTGACAGACTGTGGGACTGGAATCCAATTCCTGAAGATCATAACCATCCCAACAGTAACACCGGCGGCGACTTCAAGTAA 1314 0.4193 MAIAGGAATSSPTITMSLSNNTHEDGTSNSNDNNIITKATTTTTTAIVDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPIARPSSIPSSSRTSHSEKNKQNETLGLGFVVGQSSKVIDNQIVNKMDGNNNSSGGGDCNSDQVTTALGLSKYNHSTPTYSAEEEEQLIMMQQQQQQQQQQPRQVVQYAGGNSVLVSACGGGGAIFPVSAASASCSTIGSTSAAMMMDDLNRLVSYQQQQYCYNVQNHSNPNPNHLSTLLMQPMSLPNQLPTTFSDRLWDWNPIPEDHNHPNSNTGGDFK* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0066 437 Pfam No apical meristem (NAM) protein 59 183 IPR003441 GO:0003677|GO:0006355
Psa4g0066 437 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 40 426 - -
Psa4g0066 437 ProSiteProfiles NAC domain profile. 57 204 IPR003441 GO:0003677|GO:0006355
Psa4g0066 437 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 40 426 - -
Psa4g0066 437 Gene3D NAC domain 66 207 IPR036093 GO:0003677|GO:0006355
Psa4g0066 437 MobiDBLite consensus disorder prediction 222 243 - -
Psa4g0066 437 MobiDBLite consensus disorder prediction 213 243 - -
Psa4g0066 437 Coils Coil 298 318 - -
Psa4g0066 437 SUPERFAMILY NAC domain 57 203 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0066 Psa-Chr4 3283118 3286387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0066 46 233 NAC Transcription Factor Family AT5G39820 46.818 1.34e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g0066 NAM 4.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0066 - - mtr:MTR_4g134460 634.024