Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0060 ATGCAATCGTCTCGGGAAGGACCGAATTCAGACGGTCTCAATTTCTATCACCAACCTGGTCAGGGGATTTACCTACAAGGCAATCTATGTGTTGATAGACATGGTAGCAGCAGCCAGGGGACTGGTTTTTCTTTCGAAACTAACAAGGAGCAATGCTTCCCCGTGGAGTCATACCCGGAAATTGTTGGTTTCATGGATTGTGATTCCCCTTCCTATGCTAGTGTATCATCTAACAAGAGTCCGTTTTCTCCGCAAGATTCTCAGTCTTGCTATTCGGATCACCACCAGTCATCTGACAACACCTATGGATCGCCGATAAGCGGGATGTCTAGTGTTGATGATGGCAATGATTTGAAACACAAGCTTAGAGAGCTGGAGAATTCTTTATTGGGGCCTGATGATTTCGATATTGTTGACAGTTACGGCAGCAGCATGGAGGCTAGTCTCCACGGAGCATGTCCATCAGGTAGATATAATTGGGATCTGATTGCCGAAAATATTCCAAAGCTTGACATGAAAGAAGTCCTCTTGCTATGTGCACAAGCTGTGTCTGACGGCGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGTGAAGATGGTGTCGGTAACCGGAGAACCAATCCAGAGGTTAAGTGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAATCGTCCGGAATCTTGATCTATAAAGCTTTGAAATGTGAACAACCAACAAGCAAAGAGCTAATGAGTTACATGCACGTCCTGTATCAGATTTGCCCATATTTTAAATTTGCATACATCTCTGCAAATGCGGTTATTCATGAAACAATGGCAAATGAATCCCGGATTCATATAATTGATTTCCAAATCGCACAGGGCACACAGTGGCATTTACTTATTCAAGCTCTTGCACACAGACCTGGTGGACCCCCTTTCATTCGAGTAACAGGTGTTGATGATTCCCAATCATTTCATGCTCGCGGTGGAGGACTTCAGATTGTAGGACAGCGGCTATCAGATTTCGCCAGATCTTGCGGAGTTCCGTTTGAGTTCCATAGTGCTGCAATGTCTGGTTGCGAAGTTCAACAAGAAAACCTTAGTATTAGACCCGGGGAAGCCCTTGCTGTAAATTTCCCTTATATTTTGCACCACATGCCAGATGAGAGTGTGAGCATAGAGAATCATAGAGACAGATTACTGAGATTGGTTAAAAGCTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCTTTCTTTCATAGGTTTGTTGAGACAATGGACTATTACACAGCTATGTTCGAGTCAATAGATGTTGCTTGCGCCAAAGACGATAAGAAGCGGATTAGTACAGAGCAGAACTGCGTCGCACGGGACATTGTCAACATGATAGCCTGTGAGGGGATTGAAAGGGTTGAGAGGCATGAACTTTTTGGAAAGTGGAGGTCGAGATTCTCCATGGCTGGATTTAAACAATGCCAATTGAGTTCTTCAGTGATGCATTCTGTCGAAAATATGTTGAAGGACTTCAATCAAAATTACAGACTGGAACATAGAGATGGTGCTCTCTATCTTAACTGGATGAAGAGAGCTATGGCCACTTCATCTGCTTGGAGGTGA 1632 0.44 MQSSREGPNSDGLNFYHQPGQGIYLQGNLCVDRHGSSSQGTGFSFETNKEQCFPVESYPEIVGFMDCDSPSYASVSSNKSPFSPQDSQSCYSDHHQSSDNTYGSPISGMSSVDDGNDLKHKLRELENSLLGPDDFDIVDSYGSSMEASLHGACPSGRYNWDLIAENIPKLDMKEVLLLCAQAVSDGDIPTARGWMDNVLVKMVSVTGEPIQRLSAYLLEGLRARLESSGILIYKALKCEQPTSKELMSYMHVLYQICPYFKFAYISANAVIHETMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRVTGVDDSQSFHARGGGLQIVGQRLSDFARSCGVPFEFHSAAMSGCEVQQENLSIRPGEALAVNFPYILHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHELFGKWRSRFSMAGFKQCQLSSSVMHSVENMLKDFNQNYRLEHRDGALYLNWMKRAMATSSAWR* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0060 543 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 542 - -
Psa4g0060 543 Pfam GRAS domain family 173 543 IPR005202 -
Psa4g0060 543 ProSiteProfiles GRAS family profile. 163 543 IPR005202 -
Psa4g0060 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 542 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0060 Psa-Chr4 2927195 2930431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0060 42 543 GRAS Transcription Factor Family AT4G17230 60.990 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa4g0060 GRAS 2.7e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0060 - - gmx:100776109 864.759