Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0055 ATGACAGGAGAAACAGTGAATCCAAAAGCATACCCTCTGGCTGATGCACAGCTTACAATAACAATAATGGCCACAAACCCTAAATCAGCCTGCGCTTCTCTGCTCCTTACTGCCGCCGCAGCCGCTCGCAGTCACCGACAAGAAGTTGCAACCATGGGGCGAGTTCGTACCAAAACCGTGAAGAAATCCTCCCGTCAAGTCATCGAGAGGTACTACTCTCGAATGACTCTGGATTTCCACACCAACAAGAAGATTCTAGAGGAGGTTGCTCTGATTCCAACAAAGAGGCTTCGAAACAAGATTGCAGGATTCTCCACTCACCTTATGAAGCGTATCCAGAAAGGACCGGTTCGCGGAATCTCCCTGAAGCTGCAGGAGGAGGAACGTGAACGTCGTATGGACTTTGTTCCTGAAGTCTCTGCCATTAGGACTGACCAGATCGAAGTCGATAAGGAAACTCTTGAAATGCTTGCCGCTCTCGGTATGTCTGAGATTCCCGGCGTCGTCCAGGTTGATCCGGTTGCAGTTCAGCCGATCCCCTTTGGTCGCGGTGGTGGCGGCGCTGGTGCTCCTGGAAGGAGGGGAATTGAAGAAATGCTAACCGGTCCAACCGGTTTACACCACCAAGACCAGAAGATATTTTATAAAAACAAAGAGAGAGTTTCAAAGGAGTTTCTTGACGTTGTAGGAGTCAAAGATAAATCAAAGTTAGTGTTAATGGAAGATCCTATTAGTAAAGAGAAAAGGTACTTAGAAATGAGAAAGAATGTGACTATGGAAAAAGCTTCAAAATCTATTTCAGAAATTAGTTTGGATGTAGATAGGCTTGCAGGACAGGTGTCTGCTCTTGAAACAATAATTAATAAAGGTGGGAAAGTTGTAGAGGCTGATTTGCTTAAATTGATTGAGAAGTTGATGAATCAATTGCTTAGATTGGATGGTGTAATTGCTGATGGAGATGTTAAGTTGCAGAGGAAAATACAGAAACTACAAAAACTATAG 1002 0.4461 MTGETVNPKAYPLADAQLTITIMATNPKSACASLLLTAAAAARSHRQEVATMGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPTKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETLEMLAALGMSEIPGVVQVDPVAVQPIPFGRGGGGAGAPGRRGIEEMLTGPTGLHHQDQKIFYKNKERVSKEFLDVVGVKDKSKLVLMEDPISKEKRYLEMRKNVTMEKASKSISEISLDVDRLAGQVSALETIINKGGKVVEADLLKLIEKLMNQLLRLDGVIADGDVKLQRKIQKLQKL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0055 333 Gene3D - 52 113 IPR036401 GO:0003735|GO:0005840|GO:0006412
Psa4g0055 333 SUPERFAMILY BAG domain 225 328 IPR036533 GO:0051087
Psa4g0055 333 Hamap 30S ribosomal protein S17e [rps17e]. 52 114 IPR001210 GO:0003735|GO:0005840|GO:0006412
Psa4g0055 333 SUPERFAMILY Rps17e-like 52 113 IPR036401 GO:0003735|GO:0005840|GO:0006412
Psa4g0055 333 Pfam BAG domain 266 327 IPR003103 GO:0051087
Psa4g0055 333 Gene3D - 194 241 - -
Psa4g0055 333 PANTHER 40S RIBOSOMAL PROTEIN S17 52 187 - -
Psa4g0055 333 Pfam Ribosomal S17 52 171 IPR001210 GO:0003735|GO:0005840|GO:0006412
Psa4g0055 333 Gene3D BAG domain 242 333 IPR036533 GO:0051087
Psa4g0055 333 PANTHER 40S RIBOSOMAL PROTEIN S17 52 187 IPR001210 GO:0003735|GO:0005840|GO:0006412
Psa4g0055 333 ProSitePatterns Ribosomal protein S17e signature. 92 107 IPR018273 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0055 Psa-Chr4 2207467 2209495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0055 52 193 Cytoplasmic Ribosomal Protein Gene Family AT2G04390 81.119 3.78e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0055 K02962 - gmx:100819067 242.662