Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0035 ATGGAACTTTCTAGCACCCAAGATGGTGAAATCCAAATCCCATCTAATAATTACGTTGCTACTGCCCATGGCGTTAGTGCTAACGGACATGGTCATCATCATCATCATCACATGATTCATCACCATGCTCCTCCTCCTCCGCCACCTCTTCTACACCACCACAATAACATCATAACATCTTCCTCAGCCGCAGCGGTTCCCGTGGCAGCAGTAGTACCTCAGAGTCAGAACCCTTCCATTAACGGCACAACCACCACAACCACAAACTCTACTAGTGTAGAACTAGATCTTGATCAATCCTCGTACAAGAAACCATTATCGCAAGTGGCGGTCAAGTACAGAGAATGCTTGAAGAACCATGCAGCTGCAATGGGAGGAAACGCTACAGATGGTTGCGGTGAGTTCATGCCAAGTGGTGAACAAGGTTCCATAGAAGCACTCATCTGTTCAGCTTGCCATTGTCACAGAAACTTCCACAGAAAAGAAATTGAAGGTGAGACTGATGAAGAAAACTACCCACACCACCATAACTCACCTTTCAACTTCAACTTCAACGTCAACAGACAACAACAACAACATCACAGCATGAGAAAATTTATGTTACCGCTTTCGGATCAACCTCTCGGCCTCGGCTACCACCACCATCACACTACTCCTAACTCTACATCAGCAGCCGTAACAGTAACAGGTAACAACAACAACAACAACAATATTCTTCCTTCTAGAGCTGTAGCACCACCACCACATGGACACATCATTATGCCTTTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGAACATGGCAGAACACAAAGTCACCATCAGCAGGTAGTGATGAAGAAGAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGAGAAAATGCTGAACTTTGCTGAGAAAGTTGGATGGAAATTTCAGAAACAAGAAGAATCTCTGGTGCAACAGTTCTGTGCGGAAATTGGCGTGAAGAGAAGAGTGCTAAAGGTTTGGATGCATAACAATAAACACAATCTTGCCAAAAAACAACATATTGATATTAGCACTGATAATCTTCCAACTCCTTAA 1077 0.4364 MELSSTQDGEIQIPSNNYVATAHGVSANGHGHHHHHHMIHHHAPPPPPPLLHHHNNIITSSSAAAVPVAAVVPQSQNPSINGTTTTTTNSTSVELDLDQSSYKKPLSQVAVKYRECLKNHAAAMGGNATDGCGEFMPSGEQGSIEALICSACHCHRNFHRKEIEGETDEENYPHHHNSPFNFNFNVNRQQQQHHSMRKFMLPLSDQPLGLGYHHHHTTPNSTSAAVTVTGNNNNNNNILPSRAVAPPPHGHIIMPFNYNIPSESDEQEEHGRTQSHHQQVVMKKRFRTKFTQEQKEKMLNFAEKVGWKFQKQEESLVQQFCAEIGVKRRVLKVWMHNNKHNLAKKQHIDISTDNLPTP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0035 358 Pfam ZF-HD protein dimerisation region 111 163 IPR006456 -
Psa4g0035 358 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 283 339 IPR006455 -
Psa4g0035 358 Gene3D - 266 345 - -
Psa4g0035 358 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 113 162 IPR006456 -
Psa4g0035 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 345 - -
Psa4g0035 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 32 345 - -
Psa4g0035 358 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 112 163 IPR006456 -
Psa4g0035 358 SUPERFAMILY Homeodomain-like 274 344 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0035 Psa-Chr4 902880 904576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0035 109 354 ZF-HD Transcription Factor Family AT2G02540 48.819 7.55e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa4g0035 ZF-HD_dimer 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0035 - - mtr:MTR_4g134580 435.261