Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0020 ATGGCTCTCATCCTGCATACTGGCCAAGGAAACAAAAATGCTTACAAAGCACTCATTGCTGCCGAATATGCTTCCGTTCAAGTTCAATATGCCCCTAACTTTGAATTTGGTGTCTCTAATAAAACTCCTCAATTTCTCGCCATGAATCCTCTTGGCAAAGTTCCTGTTTTGGAAACCCCACACGGTCCTGTCTTTGAGAGCAATGCTATTGCTCGTTATGTTGCTCGATCTAAAGACGACAACACTCTCTTTGGATCTTCTCTCATCGAATATGCTCAAGTTGAGCAATGGATTGATTTTTCATCTTTTGAGATTGATTCCAATATTCAGAAGTGGTACTACCCAAGAGTCGGATATGGAACATACCTTCCTCCGGCCGAGGAGGCTGCAATTGCCGGGGTGAAGAGAGCTTTGACTGCTTTGAACACTCACCTTGCCTCCAATACTTACCTGGTTGGCCATTCTGTCACCCTTGCCGACATCATTATGATAAGCAATTTGTATTTGGGTTTCACTAAAATCTTGCTCAAGACCTTCACCTCTGACTTTCCTCATGTGGAGAGGTACTTCTGGACTTTGGTCAACCAGCCAAACTTCCGCAAGATATTAGGCCAGGCCAAGCAGACTGAAGCTGTACCACCTGTTCAATCTGCAAAGAAGCCTGCCCAGCCAAAGGAGTCCAAGCCCAAGGAGGCCAATAAGGTCGCAGAAAAGCCCAAAGAACCAGAGGTTGAAGAGGAGGCGCCCAAGCCCAAACCCAAGAACCCACTTGATCTTCTTCCTCCTAGTAAGATGGTACTAGATGAATGGAAAAGACTCTACTCAAACACCAAGACCAACTTCAGGGAGGTTGCAATCAAAGGATTTTGGGATATGTATGATCCTGAAGGATACTCTCTCTGGTTCTGTGATTACAAATACCAAGATGAGAACACTGTTTCCTTTGTGACTTTGAACAAGGTTGGTGGATTTCTTCAGAGGATGGATTTGGCCCGCAAATATGCATTTGGTAAGATGCTTATAATTGGATCGGAGCCACCTTTTAAGGTGAAGGGATTGTGGCTTTTCCGCGGGCAAGAAATCCCAAAGTTTGTGATGGAGGAATGCTATGACATGGAGCTGTATGAATGGACCAAGGTGGACATATCGGATGAAGCTCAAAAGGAGCGAGTCAGTCAGATGATTGAAGATTTTGAACCTTTTGAGGGAGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGA 1242 0.4493 MALILHTGQGNKNAYKALIAAEYASVQVQYAPNFEFGVSNKTPQFLAMNPLGKVPVLETPHGPVFESNAIARYVARSKDDNTLFGSSLIEYAQVEQWIDFSSFEIDSNIQKWYYPRVGYGTYLPPAEEAAIAGVKRALTALNTHLASNTYLVGHSVTLADIIMISNLYLGFTKILLKTFTSDFPHVERYFWTLVNQPNFRKILGQAKQTEAVPPVQSAKKPAQPKESKPKEANKVAEKPKEPEVEEEAPKPKPKNPLDLLPPSKMVLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYQDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPKFVMEECYDMELYEWTKVDISDEAQKERVSQMIEDFEPFEGEALLDAKCFK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0020 413 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 253 413 IPR036433 GO:0003746|GO:0006414
Psa4g0020 413 SFLD Glutathione Transferase (cytosolic) 5 190 IPR040079 -
Psa4g0020 413 CDD GST_N_EF1Bgamma 5 77 - -
Psa4g0020 413 Pfam Glutathione S-transferase, C-terminal domain 130 197 IPR004046 -
Psa4g0020 413 Gene3D - 80 215 - -
Psa4g0020 413 SUPERFAMILY eEF1-gamma domain 253 413 IPR036433 GO:0003746|GO:0006414
Psa4g0020 413 SFLD Main (cytGST) 5 190 - -
Psa4g0020 413 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 413 IPR044628 GO:0004364
Psa4g0020 413 MobiDBLite consensus disorder prediction 210 258 - -
Psa4g0020 413 CDD GST_C_EF1Bgamma_like 90 210 - -
Psa4g0020 413 SUPERFAMILY GST C-terminal domain-like 73 214 IPR036282 -
Psa4g0020 413 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Psa4g0020 413 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 253 413 IPR001662 GO:0003746|GO:0006414
Psa4g0020 413 Gene3D Glutaredoxin 1 74 - -
Psa4g0020 413 SUPERFAMILY Thioredoxin-like 2 84 IPR036249 -
Psa4g0020 413 PANTHER - 1 413 - -
Psa4g0020 413 Pfam Elongation factor 1 gamma, conserved domain 252 360 IPR001662 GO:0003746|GO:0006414
Psa4g0020 413 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Psa4g0020 413 SMART EF1G_2 252 360 IPR001662 GO:0003746|GO:0006414
Psa4g0020 413 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
Psa4g0020 413 MobiDBLite consensus disorder prediction 223 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0020 Psa-Chr4 455789 458190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0020 1 413 Eukaryotic Initiation Factors Gene Family AT1G57720 75.663 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0020 K03233 - gmx:547637 687.567