Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0018 ATGGATATGGATGCTGAAACGGATCTCGAGCATACGGGGAACGGAGAAGAAAGAGTAGGGATTCTCATTTCATCAAGATCATCATCAACAACAACAGGATCTGGATCTGGTATCCAAGAGCCTCTTCTTGTCAAGAACAGCAGACTCAATACCACTTCCCAACATGCTATTGTTGGAGCCAATGTTTGTCCGATCGAAAGTCTCGACTACGAGATCTTTGAGAATGATATATTCAAACAAGACTGGAGGTCTAGAGCAAAAGCTGAGATAATACAGTATGTCTGCCTCAAATGGACCTTTGCACTTCTTATTGGATTAGGCACAGGTCTTGCTGCATTTTTCAGTACCATTGGAGTTGAGAATATTGCCGGTTTCAAGCTTAATATCACCAACGATCTCATGCTTAATCAAAAGTTTCGTCAAGCTTTTGCAGTGTTTGCTGGTTGCAACATGATTTTAGCCATCGCTGCTGCTGCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCTGGCATTCCTGAGGTCAAGGCATATCTCAATGGCATAGACGCTCCTTCAATATTGGCTACAAGAACCCTCTTCGTAAAGATTTTTGGTTCAATTTTCGGGGTTGCAGCTGGTTTTGTTGTGGGCAAGGAAGGGCCTATGGTGCATACAGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGGTCTACAAAATATGGACTGACCTGGAAAGGGTTCAGACAATTTAAAAATGACAGAGACCGAAGGGATTTAATCACATGCGGTGCGGCTGCTGGTGTTGCTGGTGCCTTCCGTGCCCCGGTTGGTGGTGTTCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTCACTACAGCTGTAGTAGCTGTAGTGCTGAAATGTTTCACGGAATATTGCAAGGATGAAAAGTGTGGTCTTTTTGGGGAAGGAGGTTTGATCATGTTTGAAGTTAATTATGCAAAGCCGTCATACAGCATACCTGATATACTGGTAGTTATATTTCTTGGAGTTGTTGGAGGTCTTTTGGGAAGCCTATACAATTATCTCGTCGATAAGGTCCTTCGCGTTTACAGCGTCATTAATGAGAAAGGACCAATATTTAAAATAATACTTGTGATGATTATATCCTTTTTGACCTCTTGCTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATGCCATGTCCTCCTCAAGCGGGGGATCAGTGCCCCACCGTAGGGCGTTCCGGACACTATAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTCGCCTCTCTCTTTTTTACTACCAATGACGATGCTATCCGCAACCTCTTTATTGCCGGCACTGACAAGAGATTCCTGCTCTCCAGTCTCCTAATATTCTTTGTGGCAATCTACTTCCTCGGAATCATCACATATGGAATTGCCATTCCGTCGGGGCTGTTTATTCCGGTTATACTTGCAGGGGCGTCTTATGGTCGTGTTGCAGGAAGTCTGTTAAGTCCATTCACAGTTCTAGATGTGGGTTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGCGGCACAATGAGAATGACGGTTTCTCTCTGTGTGATACTTCTTGAACTCACGAACAACCTCCTGATGCTACCATTGGTGATGCTGGTTCTCCTGATCTCAAAGTCCGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATAGTGGAAATGAAGGGACTGCCATATTTAGAAGCGCACGCAGAACCTTACATGAGGCAGTTAGCTGCGGGGGATGTGGTTTCTAGTCCGCTGTTTACGTTCTGTGGGATTGAAAAAGTGGGGAATATCGTGCACACTTTGAAGGTGACGCGGCATAACGGGTTTCCTGTGATTGACGGGCCTCCGTTCTCAGATGGAGCTGAGTTGTGTGGATTGGTATTGAGGTATCATCTGCTGGTAGTTCTTAAACACAAGGTATTTATGACGAACCAAAGGGGGTCGTCCTCGATTTTGAAAAAGTTGAGCGCAGATGAATTTGGAAAGCCAGGTGCAGGGAAAGGGATAATGCTGGAGGAGTTAGAGATATCAGAGGAGGAGATGGAAATGTATGTTGATCTGCATCCTATTACCAACAGGTCATCCTATACGGTGTTGGAAACAACGTCTCTAGCTAAAGCTGCTATTCTTTTCCGCGAGCTTGGCCTCAGACACTTGTTGGTGGTCCCAAAGACACTCGGAGGACCTCCAGTTGTGGGGATTCTAACAAGGCACGACTTGATGGCGGAACATGTATTGGGGCTGTACCCTCACTGCGTTCCCGAAAGGAAACAGAGTTATTATCAAGACACACAATCTCGTTTATAG 2376 0.4537 MDMDAETDLEHTGNGEERVGILISSRSSSTTTGSGSGIQEPLLVKNSRLNTTSQHAIVGANVCPIESLDYEIFENDIFKQDWRSRAKAEIIQYVCLKWTFALLIGLGTGLAAFFSTIGVENIAGFKLNITNDLMLNQKFRQAFAVFAGCNMILAIAAAALCAYIAPAAAGSGIPEVKAYLNGIDAPSILATRTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSTKYGLTWKGFRQFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLKCFTEYCKDEKCGLFGEGGLIMFEVNYAKPSYSIPDILVVIFLGVVGGLLGSLYNYLVDKVLRVYSVINEKGPIFKIILVMIISFLTSCCSFGVPWLSKCMPCPPQAGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGTDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLAAGDVVSSPLFTFCGIEKVGNIVHTLKVTRHNGFPVIDGPPFSDGAELCGLVLRYHLLVVLKHKVFMTNQRGSSSILKKLSADEFGKPGAGKGIMLEELEISEEEMEMYVDLHPITNRSSYTVLETTSLAKAAILFRELGLRHLLVVPKTLGGPPVVGILTRHDLMAEHVLGLYPHCVPERKQSYYQDTQSRL* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0018 791 SMART cbs_1 607 660 IPR000644 -
Psa4g0018 791 SMART cbs_1 717 768 IPR000644 -
Psa4g0018 791 Pfam CBS domain 716 764 IPR000644 -
Psa4g0018 791 Gene3D - 588 769 IPR046342 -
Psa4g0018 791 Gene3D Clc chloride channel 89 587 - -
Psa4g0018 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 38 776 - -
Psa4g0018 791 ProSiteProfiles CBS domain profile. 714 778 IPR000644 -
Psa4g0018 791 CDD ClC_6_like 66 587 - -
Psa4g0018 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 766 - -
Psa4g0018 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 38 776 - -
Psa4g0018 791 Pfam Voltage gated chloride channel 154 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Plant CLC chloride channel signature 71 79 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0018 791 PRINTS Plant CLC chloride channel signature 282 290 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0018 791 PRINTS Plant CLC chloride channel signature 296 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0018 791 PRINTS Plant CLC chloride channel signature 314 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0018 791 PRINTS Plant CLC chloride channel signature 438 454 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa4g0018 791 SUPERFAMILY Clc chloride channel 75 590 IPR014743 -
Psa4g0018 791 SUPERFAMILY CBS-domain pair 591 765 IPR046342 -
Psa4g0018 791 PRINTS Chloride channel signature 166 183 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Chloride channel signature 261 280 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Chloride channel signature 486 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Chloride channel signature 518 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Chloride channel signature 536 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa4g0018 791 PRINTS Chloride channel signature 574 588 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0018 Psa-Chr4 331688 335824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0018 3 777 Ion Channels AT5G49890 72.529 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0018 K05016 - twl:119982419 1060.83