Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4739 ATGTCTTGCTCCAATGTCACCATGTTAGTCTCCTCCAAACCTTCATTACCTGATGCTTCCAACCTCTCCTTCCGTTCTGCTTTCAACCCTTTTCAGCTTCCTTCACAAAACTCTTCCTCTTCTTGCACCCCTTCAAGACCCACCTCAATCCAGTGTGGTCTCAAGGATCTCAAAAACCGTATCGATTCCGTCAAAAACACTCAGAAAATCACCGAGGCAATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCTCAAGAAGCTGTTGTGAATGGCAGACCTTTCTCAGAGACACTTGTTGAAGTTCTTTACAGCATCAACGAACAGCTTCAAACCGACGATATCGAATCCCCTCTAACTAAGCTTAGACCGGTGAAGAAAGTCGCTCTCGTCGTCTGCACGGGCGATAGAGGTCTCTGTGGTGGATTCAACAATGCAATATTGAAAAAAGCTGAAGCTAGAATTGCTGAGTTGAAAGAGCTTGGTCTTGAGTACACTGTTGTCAGTGTTGGTAGAAAGGGTAACTCTTATTTCAATCGTAGACCTTATATACCTGTTGATAGGTTTCTTGAAGGTGGATCACTTCCTACTGCTAAAGAAGCACAGACTATTGCGGATGATGTTTTCTCACTTTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTTTTGTACACTAAGTTTGTGTCACTAGTGAAATCAAATCCTATAATTCATACTTTGCTTCCACTCTCACCAAAAGGTGAAATCTGTGATATCAATGGAAACTGTGTTGATGCTGCTGAGGATGAGCTTTTCAGGTTAACAACAAAAGAAGGAAAGTTAACCGTTGAAAGAGATGTTATTAGATCCAAGACGGTTGATTTTTCGCCGATTTTGCAGTTTGAGCAGGACCCTGTTCAGATTCTCGATGCACTTTTGCCGCTTTATTTGAACAGTCAAATCTTGAGGGCGTTGCAGGAATCGCTTGCTAGCGAGTTAGCTGCTAGAATGAGTGCTATGAGTAGTGCTTTTGATAATGCCAGCGAGTTGAAGACTGATTTGACAAGGGTTTACAATAGGCAACGCCAAGCGAAGATCACCGGCGAAATTCTGGAAATCGTTGCTGGGTCTGATGCCTTGATATAG 1125 0.4276 MSCSNVTMLVSSKPSLPDASNLSFRSAFNPFQLPSQNSSSSCTPSRPTSIQCGLKDLKNRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTDDIESPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAEARIAELKELGLEYTVVSVGRKGNSYFNRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSNPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDVIRSKTVDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSAFDNASELKTDLTRVYNRQRQAKITGEILEIVAGSDALI* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4739 374 Hamap ATP synthase gamma chain [atpG]. 51 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 PRINTS ATP synthase gamma subunit signature 125 144 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 PRINTS ATP synthase gamma subunit signature 218 235 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 PRINTS ATP synthase gamma subunit signature 320 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 PRINTS ATP synthase gamma subunit signature 351 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 53 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 CDD F1-ATPase_gamma 54 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 PANTHER ATP SYNTHASE GAMMA CHAIN 1 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 104 - -
Psa3g4739 374 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 53 373 IPR035968 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 Coils Coil 54 74 - -
Psa3g4739 374 Pfam ATP synthase 54 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa3g4739 374 Gene3D - 116 244 - -
Psa3g4739 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 273 373 - -
Psa3g4739 374 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4739 Psa-Chr3 436729312 436731279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4739 28 373 Primary Pumps ATPases AT1G15700 68.300 5.03e-174 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4739 K02115 - gmx:100797290 595.504