Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4734 ATGCAGGATTCCACTTCATCTGTCAAGGCAGAATGGATGATTCACATGGAAAGAACAGAATCCAACTATCATGAGGATACTTCTGCTGTGGAATCTGGAAAGCAAGACCTTGTAGAGGTTCTTCAAATCTGCCTCACCAAGGCAGAAGTAGGTTCACAACAATGGAGAAATGCTCAAGAGTCATTGCTAAGTTTAGAGAAGGGAAATGTTGTGTCTGTGGATACTATTGTTCAGGGAGGAATGGAAGTTAATCAAGCTCTACAAGCCCGATTCTCAAGTGTTATGGCAACTACAGTTGATGATGTTCAACAATCTTCTCAAGGGCGTGGTCGCAGTCCTGATTTCAGTGATAGGTATGATAGGAATGGAAATGGAGGATCAGATGAAAGTGGATTCCAGAGCCATCAGAGCTCCAAAGGTGGCACTAATAGTTCTCATAATAATGTTGCAAATGGAACACATGTTACTGGAAATCTTAGTTCTATCAAAGGTCACGTAGCATCAGATACAGGACCTGCATTAACTCCAGAGGCTTATAGACGTCGTCATGAGATCACTGTTACGGGAGATAATGTGCCTCCACCTCTTACGTCATTTGCGTCTTCTGGAATTCCATCTGAGATTCTTAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCGTGGCCCATTGCCCATCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTCAAGCGCACTAATAATAACGCCAAAATGGGACCCAATATATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAAATTCAAGATGAAGTTGTTAAGTTTAGTAAAACATCAAGAATTGCCTGCACTTATTTGTACGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGCGGAGCGGATATTGTGGTAGCCACACCTGGTCGCTTGAATGATATTCTTGAGATAAGGAGAATCGGTTTACACCAGGTCTCTTACCTAGTCCTAGACGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGGTTGTGAACAGCGTGCCCGCTCGCAGGCAAACTCTTATGTTTACGGCAACCAGGCCTAAAGAGGTTAGGAAAATTGCAGCTGACCTGCTTGTCAATCCTGTCCAAGTGAACATTGGCAACGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTTTTGGCACATATGGAAACAGCGGAGACTGGAAAGTATTTTGCGGTCACAGGATCAAAGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCTTGTACTTGTAGCTACAGATGTTGCTGCTCGTGGACTGGACATCAAAGACATTAGAGTGGTTGTCAACTACGACTTCCCTACAGAAGAAAGCACTGCACATATTCCCTAG 1515 0.431 MQDSTSSVKAEWMIHMERTESNYHEDTSAVESGKQDLVEVLQICLTKAEVGSQQWRNAQESLLSLEKGNVVSVDTIVQGGMEVNQALQARFSSVMATTVDDVQQSSQGRGRSPDFSDRYDRNGNGGSDESGFQSHQSSKGGTNSSHNNVANGTHVTGNLSSIKGHVASDTGPALTPEAYRRRHEITVTGDNVPPPLTSFASSGIPSEILKEVQNAGFSAPTPIQAQSWPIAHQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPNILVLSPTRELATQIQDEVVKFSKTSRIACTYLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEIRRIGLHQVSYLVLDEADRMLDMGFEPQIRKVVNSVPARRQTLMFTATRPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMETAETGKYFAVTGSKIKDNYFLFYQENADRDHVLNQFRSGRTLVLVATDVAARGLDIKDIRVVVNYDFPTEESTAHIP* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4734 504 MobiDBLite consensus disorder prediction 98 147 - -
Psa3g4734 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 197 225 IPR014014 GO:0003724
Psa3g4734 504 Gene3D - 174 409 IPR027417 -
Psa3g4734 504 SMART ultradead3 216 419 IPR014001 -
Psa3g4734 504 SMART helicmild6 433 504 IPR001650 -
Psa3g4734 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 126 427 - -
Psa3g4734 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 454 496 - -
Psa3g4734 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 504 IPR001650 -
Psa3g4734 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 402 IPR014001 -
Psa3g4734 504 Pfam DEAD/DEAH box helicase 221 391 IPR011545 GO:0003676|GO:0005524
Psa3g4734 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 404 IPR027417 -
Psa3g4734 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 348 356 IPR000629 -
Psa3g4734 504 MobiDBLite consensus disorder prediction 126 147 - -
Psa3g4734 504 MobiDBLite consensus disorder prediction 98 112 - -
Psa3g4734 504 Pfam Helicase conserved C-terminal domain 452 499 IPR001650 -
Psa3g4734 504 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 427 - -
Psa3g4734 504 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 454 496 - -
Psa3g4734 504 Gene3D - 453 498 IPR027417 -
Psa3g4734 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 496 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4734 Psa-Chr3 436388628 436390289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4734 195 495 Eukaryotic Initiation Factors Gene Family AT3G19760 29.846 3.08e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4734 K12823 - gmx:100786511 586.645