Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4689 ATGGCTTCTACTACACCTTCTGTTTCCTCTTACATCTACAACAGAATCTACAACCTTTCATCCACACACTCTTCCATTTCTCTCACCACAAACTTCCCTCAAAGACCCATATCCTATAAACCCCTCAATCTCATCCTCAAGTCTCAAAATGCATTTGAAACTAATGTAGACACCACAGTTTCTCAACAAGAGGAACAAGAAACAGAAACAGAACAGGAAACATCTGATGAACCAAAGAAAGAGGAAGAACAGAAAGTGTCAACCTCAGACAATGCTGGAAGACTCTACGTTGGAAATTTGCCGTTTCGAATGACTTCTGCTCAATTGTCTGAGATCTTTGCAGAAGCTGGCACTGTCGTCTCTGTTGAGGTGGTGTATGATCGAGTTACCGCCAGAAGTAGAGGATTTGCATTTGTTACAATGAAGAGTGTTGAATATGCTAAAGCAGCAATTCAAATGTTTGATGGTTCTCATAAATCATTGTCTCTAGACCGATTCCTCCAAGTTCAAAACTCCTTCCATCTGACACCAGAAGATGGCAGCTTCGAAAGCTACTTGTTCTGCCGCTCAACTAAAAGTAGTTGTGGTCTTCAAAGTTGTTATAATCCTCTGACTCCTCCTCTTCGAGGGAAGAACGTTCAAGTCTTGACAACGACTCCCTTCGTTCCTCCACCGTCAGACCTTGTTCAACCCAGGACAAATTCAAGAGTGCCTCAACTTCCTCCTTTCATCGGATCCACTCCAGAATTCCATTTAGGCAAACATTCCTTCAGACCTACGTTACTTCCTACTACCGAATGCAAAGCACATTGCGATTTTCTGTGA 825 0.4255 MASTTPSVSSYIYNRIYNLSSTHSSISLTTNFPQRPISYKPLNLILKSQNAFETNVDTTVSQQEEQETETEQETSDEPKKEEEQKVSTSDNAGRLYVGNLPFRMTSAQLSEIFAEAGTVVSVEVVYDRVTARSRGFAFVTMKSVEYAKAAIQMFDGSHKSLSLDRFLQVQNSFHLTPEDGSFESYLFCRSTKSSCGLQSCYNPLTPPLRGKNVQVLTTTPFVPPPSDLVQPRTNSRVPQLPPFIGSTPEFHLGKHSFRPTLLPTTECKAHCDFL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4689 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 156 IPR000504 GO:0003723
Psa3g4689 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Psa3g4689 274 SUPERFAMILY RNA-binding domain, RBD 90 158 IPR035979 GO:0003676
Psa3g4689 274 SMART rrm1_1 94 170 IPR000504 GO:0003723
Psa3g4689 274 Gene3D - 47 177 IPR012677 -
Psa3g4689 274 MobiDBLite consensus disorder prediction 55 90 - -
Psa3g4689 274 PANTHER OS02G0815200 PROTEIN 24 157 - -
Psa3g4689 274 MobiDBLite consensus disorder prediction 73 88 - -
Psa3g4689 274 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 24 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4689 Psa-Chr3 434496325 434497873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4689 95 152 Eukaryotic Initiation Factors Gene Family AT4G34110 46.552 1.26e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4689 - - aprc:113861916 172.17