Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4646 ATGGCTAGGTTTTCTAAAAGCAATCAAGATGAAGAATTGTTGGATGATGATGATCAAGACCTCCATACCGTCAACACTTCTTCCGCCGCTCTCAACATCAACAACAACAATGTAAAGGTGGATGAACCTGGCAGAGGGAAAAGAGCGAACCCTCATCGTTCTAAGCATTCTGAGACTGAGCAGCGTAGAAGAAGCAAAATTAACGAAAGATTTCAGGTTCTGAGAGATCTTATACCTCAAAATGATCAAAAAAGAGATAAAGCTTCCTTTTTGTTGGAGGTTATTGAATATATCCAGTTCCTACAGGAAAAGTTACAAATTTATGAACATTCTTATGAAGGATGGAATCAGGAACCAAGTAAATTAATTCCATGGAGAAATCATCACGGACCTGCCGAAAACACTATAGATCCTTCTCGAGCTATTCCAAATGGGTCTGATCATGAAACACGTAACAATGTCTCTCTGTCATTGCCTAAAAACGTACAGAACGCAATAGAACCTGTCCCCTCCACAACTATTCAGAAGGGTTGCACCCCTGGTTCATCCGCAGAAGCCGCTCCTCTGACAATGCAAATGCGATTGGACATGTTTGATCCGGTTGTTAGCAGTGGTATGGTGACTCAACAGATGCTGGAGTTGCCTGTATCTAATGCTGACATGGCTTCCAATCTCCAGCCTCAAGTATGGCTTAGCAAACCAAACAATGACGACTATACTGTTCCAGATAATACATTGAAGGAAGAAGAGGAGCTGAAAATTGATAGTGGGTCAGAATCAGATAGCATCTCAAGTGCCTACTCTCAAAGAATATTGGGTACTCTCACCCAAGCTCTACAATCCTCGGGTGTAGATTTGTTGCAGACCAGTGTTTCGGTGCAAATTGATGTTGGTCGACGTTCAATTACTGGGTTAACCCCTTGCCAATATAGCTCAAAGGGTCATGAAAATCAATATATGAGCAATCAAGCAATGGCATGTGATTACTTCAGTGAGGATTCTGAGCAAAGTCCAAAGAGGTTTAGAAGAGAAGCTAGCTAG 1041 0.4188 MARFSKSNQDEELLDDDDQDLHTVNTSSAALNINNNNVKVDEPGRGKRANPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEHSYEGWNQEPSKLIPWRNHHGPAENTIDPSRAIPNGSDHETRNNVSLSLPKNVQNAIEPVPSTTIQKGCTPGSSAEAAPLTMQMRLDMFDPVVSSGMVTQQMLELPVSNADMASNLQPQVWLSKPNNDDYTVPDNTLKEEEELKIDSGSESDSISSAYSQRILGTLTQALQSSGVDLLQTSVSVQIDVGRRSITGLTPCQYSSKGHENQYMSNQAMACDYFSEDSEQSPKRFRREAS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4646 346 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Psa3g4646 346 CDD bHLH_AtBIM_like 53 126 - -
Psa3g4646 346 MobiDBLite consensus disorder prediction 1 20 - -
Psa3g4646 346 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 345 IPR044295 GO:0003700|GO:0006351|GO:0046983
Psa3g4646 346 Coils Coil 98 118 - -
Psa3g4646 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983
Psa3g4646 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 130 IPR036638 GO:0046983
Psa3g4646 346 MobiDBLite consensus disorder prediction 41 67 - -
Psa3g4646 346 PANTHER TRANSCRIPTION FACTOR BIM3 1 345 - -
Psa3g4646 346 Gene3D - 49 122 IPR036638 GO:0046983
Psa3g4646 346 SMART finulus 57 107 IPR011598 GO:0046983
Psa3g4646 346 MobiDBLite consensus disorder prediction 26 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4646 Psa-Chr3 430941138 430945884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4646 3 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.252 6.64e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g4646 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4646 - - mtr:MTR_7g017320 532.717