Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4635 ATGGGAAGAGGTAGGGTTCAACTGAAACGGATCGAGAACAAAACAAGCCAACAAGTAACATTCTTCAAAAGAAGAACAGGACTTCTCAAAAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCTTCTGCACCAAGCATGGAAGATATTTTGGAAAAATATGAGAGACAAAATCATACAGAACTTACTGGAGCTGCTACCAATGAAACACAGGGAAATTGGACTTTTGAATACATGAAGCTAACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGGCATGATCTTGATCCTATGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTCGACACGTCGCTAAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCAAGGGCATTGCAGGAACAAAACAGCAAGCTAGCAAAGACAAAGGAGAAAGAGAAGATAGTGAATGAACATCCTCCACAGAGATGCCTTGAAACCATAGGCACAGGCCAATGTTCATCCACCCTCAACTTAGGTTTTCAACCACAGAGATTGGTTCCTTCTCTAGCACTCAGTGGTGCTATACAAGCAAGAGGGTCATTGGAATTTGAAGAAACAGGTGAAGCTCAAACAGTTCCTATCAACAATAATAATAGTCTTATTCCTGCATGGATGCTACAACATCTTACTAACTAG 762 0.4042 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILEKYERQNHTELTGAATNETQGNWTFEYMKLTAKVQVLERNLRNFVGHDLDPMSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARALQEQNSKLAKTKEKEKIVNEHPPQRCLETIGTGQCSSTLNLGFQPQRLVPSLALSGAIQARGSLEFEETGEAQTVPINNNNSLIPAWMLQHLTN* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4635 253 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Psa3g4635 253 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa3g4635 253 Coils Coil 124 170 - -
Psa3g4635 253 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Psa3g4635 253 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 222 - -
Psa3g4635 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa3g4635 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa3g4635 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa3g4635 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa3g4635 253 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Psa3g4635 253 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa3g4635 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa3g4635 253 PANTHER MADS BOX PROTEIN 1 222 - -
Psa3g4635 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4635 Psa-Chr3 429768699 429772820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4635 1 177 MADS-box Gene Family AT1G26310 59.116 1.07e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa3g4635 K-box 6.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4635 K09264 - gmx:100788956 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4635 3 429768699 429772820 Psa4g1081 4 79272735 79277194 ECH
Psa3g4635 3 429768699 429772820 Psa3g4635 3 429768699 429772820 ECH
Psa1g1496 1 101267006 101270162 Psa3g4635 3 429768699 429772820 ECH