Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4631 ATGGGTTCGTTTTGTTCTTGTTTGAGTGTTGATGATTTGGAAGATTATATGAATCCACATAGCCATGTATACAGAAACTGTGTGTGCGCCGGTTGCTTCCTACAAAACCTTTTGGCTGTTTATGCGTTAGTATTTCGTAGAGGGGAAATGCACGCGCTTCCTTCATCTGTACAAGGGGCAGCATCTATGACGACTTCAGCATCACTTGACAATTCCCTATCTGACATGTACCGTTCTCCTCCAAGACCGCTGCCTTATGATGCAGACCCTAGGCATATCCGCTCACAGCACGACGCACTAGTTTCAAGACGTGAAAAGGGTTCCAGTCATTTGAATGAGGAGTCAGAACTTCTAAGAGGTGATGTTGATGCAGATACAGAATCTTTTAATTCGAGTGGTAAGTGGAATGAATCCACCGGAAAAGATGGATCAAAAGAATACCGTTCCAAGTCCTCAGTTAGACTTTCGTCGGCAAAACTTACAACTGAAGATGCGCTTGTGTACCCGTCATCAGAAGAGGAGGATGTTTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATTATGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATACGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGTTATTCGATGAAACGACTTGA 684 0.4313 MGSFCSCLSVDDLEDYMNPHSHVYRNCVCAGCFLQNLLAVYALVFRRGEMHALPSSVQGAASMTTSASLDNSLSDMYRSPPRPLPYDADPRHIRSQHDALVSRREKGSSHLNEESELLRGDVDADTESFNSSGKWNESTGKDGSKEYRSKSSVRLSSAKLTTEDALVYPSSEEEDVCPTCLEEYTEENPKIMTKCSHHYHLGCIYEWMERSDSCPVCGKVMLFDETT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4631 227 SUPERFAMILY RING/U-box 172 224 - -
Psa3g4631 227 SMART ring_2 177 217 IPR001841 -
Psa3g4631 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Psa3g4631 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Psa3g4631 227 MobiDBLite consensus disorder prediction 98 123 - -
Psa3g4631 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Psa3g4631 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Psa3g4631 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 223 IPR013083 -
Psa3g4631 227 MobiDBLite consensus disorder prediction 98 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4631 Psa-Chr3 429666802 429670752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4631 1 226 C3H Transcription Factor Family AT5G15790 56.277 6.71e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4631 - - gmx:100788192 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4631 3 429666802 429670752 Psa3g4631 3 429666802 429670752 ECH