Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4597 ATGGCGTTCTTTGGTAAAATTGGGAAATTACTCAAGAGCTCTGCTGTCAAGCACATCAATCATGATATTTCTATGTCTACTCCTTTGGCATTCCAAGCGATTAGATCTATGTCATCTGCCAAGCTTTTTGTTGGAGGTATTTCATATAGCACTGATGATACCAGTCTCCGAGAACATTTTGCTCGCTATGGGGAAGTTATTGATGCAAAGGTTATTATGGATCGTGAAACCGGCAGGTCCCGGGGTTTTGGCTTCATAACTTTTACAACAAGCGAGGATGCATCTTCTGCCCTTCAGGCCATGGATGGCCAGGAACTTCATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGTCACGCCCTGGGTTCGGTGGCGGAGGCGGCTATGGTGGAGGTGGAGGCTATGGTGGCGGTGGTGGATATGGCGGCGGTGGTGGATATGGAGGCGGTGGCGGATATGGTGGTGGTGGCTTTGGCGGTGGTGGCTATGGTGGTAGTACTTATGGTCGTAATGATAATAACAACAGTGGAAGCTATGGAAGTGGTGGTTATGCTGCCCCAGGAAGCTATAGTGGTGGCAATGCCGAGACTAGTTACGCTGCTCCTGGTGAACACGGAAGTAACTCTAATTTGGGATATGATGGTCAACTTGGTAGCCACCAAGATGGCGGTGTATTCGTTGAGCCACTTGAAAACAACCATGTGACAGAGAACAATGACGAACCTAATGACTACGCAGAAACCCAGAGGTGA 756 0.4868 MAFFGKIGKLLKSSAVKHINHDISMSTPLAFQAIRSMSSAKLFVGGISYSTDDTSLREHFARYGEVIDAKVIMDRETGRSRGFGFITFTTSEDASSALQAMDGQELHGRTVRVNYATERSRPGFGGGGGYGGGGGYGGGGGYGGGGGYGGGGGYGGGGFGGGGYGGSTYGRNDNNNSGSYGSGGYAAPGSYSGGNAETSYAAPGEHGSNSNLGYDGQLGSHQDGGVFVEPLENNHVTENNDEPNDYAETQR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4597 251 MobiDBLite consensus disorder prediction 235 251 - -
Psa3g4597 251 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 210 - -
Psa3g4597 251 SUPERFAMILY RNA-binding domain, RBD 24 150 IPR035979 GO:0003676
Psa3g4597 251 Gene3D - 15 137 IPR012677 -
Psa3g4597 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Psa3g4597 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Psa3g4597 251 MobiDBLite consensus disorder prediction 214 251 - -
Psa3g4597 251 SMART rrm1_1 41 114 IPR000504 GO:0003723
Psa3g4597 251 PRINTS Eggshell protein signature 36 52 - -
Psa3g4597 251 PRINTS Eggshell protein signature 125 140 - -
Psa3g4597 251 PRINTS Eggshell protein signature 152 162 - -
Psa3g4597 251 PRINTS Eggshell protein signature 182 200 - -
Psa3g4597 251 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4597 Psa-Chr3 427376105 427379387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4597 33 126 C2H2 Transcription Factor Family AT2G19380 35.106 3.94e-12 63.9