Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4577 ATGGCTATGTCTCCATCTTTGCTGCCTTTGGCCATTTTCATGATGTTCTTCGTACAAGTCATGGCAGGTGGCATTGACCAAAATTGGTATGATGCTCGTGCAACCTTCTATGGTGATGCAGCCGGTGGTGAAACCATGCAGGGTGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGGCTTGAAACTGCAGCATTAAGCACAGCTCTATTCAATAATGGATTTACTTGTGGTGCATGTTTTCAGATAACATGTGTCAACGACCCTCAATGGTGCATAAAAGGTGCAGCTCCAATCACAGTGACCGCAACAAACTTTTGTCCTCCAAATTATACCAAAATCGTAGATGTTTGGTGTAACCCTCCACAAAAACACTTTGATTTGAGTTATAAAATGTTCACATCTATAGCTCAATACAAAGCTGGTGTGATCCCGGTTAAATATCGACGTGTTCCATGTATCAAAAAGGGCGGTGTTAGGTTTGAACTCAAAGGAAACCCTAGTTTTTTACTTGTTTTGGTGTATAATGTTGCTAATGCTGGTGATGTTACTAATATGAGTATTAAAGGATCTAAGACTGGTTGGCTTACCATGCGACATAACTGGGGACAAAATTGGCATATCAACTATCAAAATTTAGTAGGGCAAAGCTTGTCATTTATCATTACTACAAGTGATGGAAAAACTTCTCAGTTTGATTCTGTTGCTCCTTTTAATTGGCAATTTGGACAGACTTTTGAAGGCAAGCAAAATTTTTAG 762 0.395 MAMSPSLLPLAIFMMFFVQVMAGGIDQNWYDARATFYGDAAGGETMQGACGYGDLFKQGYGLETAALSTALFNNGFTCGACFQITCVNDPQWCIKGAAPITVTATNFCPPNYTKIVDVWCNPPQKHFDLSYKMFTSIAQYKAGVIPVKYRRVPCIKKGGVRFELKGNPSFLLVLVYNVANAGDVTNMSIKGSKTGWLTMRHNWGQNWHINYQNLVGQSLSFIITTSDGKTSQFDSVAPFNWQFGQTFEGKQNF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4577 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Psa3g4577 253 Gene3D - 158 253 IPR036749 -
Psa3g4577 253 PANTHER EXPANSIN-A21-RELATED 13 253 - -
Psa3g4577 253 PANTHER EXPANSIN-A15 13 253 IPR002963 GO:0009664
Psa3g4577 253 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Psa3g4577 253 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Psa3g4577 253 SUPERFAMILY PHL pollen allergen 156 249 IPR036749 -
Psa3g4577 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Psa3g4577 253 Pfam Lytic transglycolase 64 149 IPR009009 -
Psa3g4577 253 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Psa3g4577 253 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Psa3g4577 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Psa3g4577 253 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Psa3g4577 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Psa3g4577 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Psa3g4577 253 Gene3D - 19 154 IPR036908 -
Psa3g4577 253 SMART dpbb_1 64 149 IPR007112 -
Psa3g4577 253 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Psa3g4577 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4577 Psa-Chr3 425402002 425403064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4577 20 253 Expansin Gene Family AT5G39280 68.803 7.27e-122 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4577 - - cam:101510232 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4577 3 425402002 425403064 Psa3g4577 3 425402002 425403064 ECH