Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4560 ATGTCTCCTCTAGCATTTCTTCTCCTTGGTGTTCTCCACCTGGTTTCACATGTAAATGGCCATGGTGGTCATGCTAGTTGGATTAATGCTCACGCTACTTTCTATGGTGGAAGCGATGCTTCCGGAACAATGGGTGGAGCTTGTGGATATGGAAATTTATATAGTCAAGGTTATGGAACAAATACAGCAGCATTAAGCACAGCATTATTCAACAATGGATTGAGTTGTGGTGCATGTTATGAAATTAAATGTGTGAATGATCCACAATGGTGTACTCCTGGATCCATTATAGTTACTGCCACTAATTTCTGTCCACCAGGTGGTTGGTGTGACCCTCCAAATCACCATTTTGATCTTTCTCAACCTATTTTTCAACACATTGCTCAATATAAAGCTGGAATTGTACCTGTTGCTTACAGAAGAGTAAGATGCAGAAGAAGAGGTGGAATAAGATTCACAATCAATGGACATTCTTACTTCAATTTAGTACTTGTGACAAATGTTGGAGGTGCTGGTGATGTACATTCTGTGGCCATAAAAGGTTCAAGAACAAGATGGCAAGCCATGTCAAGAAATTGGGGGCAAAATTGGCAAAGTAACTCTTACCTTAATGGACAAAGTCTTTCCTTTGTTGTCACCACAAGTAATGGTCATAGTGTGGTTTCATTCAATGCTGCTCCAGCTAGTTGGTCTTTTGGTCAAACCTACACCGGAAGACAGTTCAACTATTAA 732 0.403 MSPLAFLLLGVLHLVSHVNGHGGHASWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCTPGSIIVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPASWSFGQTYTGRQFNY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4560 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Psa3g4560 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Psa3g4560 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Psa3g4560 243 SMART dpbb_1 62 139 IPR007112 -
Psa3g4560 243 Gene3D - 149 241 IPR036749 -
Psa3g4560 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Psa3g4560 243 PANTHER EXPANSIN-A15 6 242 IPR002963 GO:0009664
Psa3g4560 243 PANTHER EXPANSIN 6 242 - -
Psa3g4560 243 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Psa3g4560 243 Gene3D - 16 145 IPR036908 -
Psa3g4560 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Psa3g4560 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Psa3g4560 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Psa3g4560 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Psa3g4560 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Psa3g4560 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Psa3g4560 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Psa3g4560 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Psa3g4560 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4560 Psa-Chr3 424415538 424416967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4560 1 241 Expansin Gene Family AT2G03090 77.912 2.97e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4560 K20628 - gmx:100790170 438.728