Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4554 ATGGGAAGATCACCATGTTGTGAAAAAGTTGGTTTGAAGAAAGGACCATGGACACCTGAGGAGGATCAAAAACTTCTATCTTACATTGAAGAAAATGGTCATGGAAGCTGGCGCGCTCTTCCGATAAAAGCCGGACTTGAGAGATGCGGAAAGAGTTGTAGACTAAGATGGACTAATTATTTGAGGCCTGATATTAAGAGAGGGAAGTTTAGTTTGCAAGAAGAACAAACCATTATTCAACTTCATGCACTTTTAGGCAACAGGTGGTCATCAATAGCCACACATTTACCTAAGAGAACAGATAATGAAATTAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCAGTTACACACAAGCCAAAAAATGAAACCCTTTTCTCTGATAATCATTCCAAGAATGCCGCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTTAGAGAATCAAAGCTACGTTCACAATACTCATTGCAACAACAACATCATCAACTTGGAAGTAATAATAATTCGGTTTTTCCGTCACAATCTTCGTCATCGGCTTCATCGTCTTCGGTTCAAGTACTTGATGTTAAAGATGAAGGTGAGAAAGAGTGGAAAGGTTATGAAGATTCAACACATTTGTTAGAATTCAAAGATCCCATTGAGGGTTCATCAATGGCTTTTAGTTCTACCATGCAACATGATATGTCAATGATCAATGTTGCTGAGGAGGGTTTCACTAATCTCTTGCTCGATAATTCTAATTCCGATGACCCGAGTTTGTCACCGGAGAGTGGCGTAGAGTGTAATACTTGCGATGGAAATGGCAACGGCAGCGGTGGAAGTGATTTCTACGAAGATAACAAGAATTACTGGAACAACATTCTTAATTTAGTGAATTCTTCGCCTTCTGATCCGTTGTTCTGA 957 0.3929 MGRSPCCEKVGLKKGPWTPEEDQKLLSYIEENGHGSWRALPIKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNETLFSDNHSKNAANLSHMAQWESARLEAEARLVRESKLRSQYSLQQQHHQLGSNNNSVFPSQSSSSASSSSVQVLDVKDEGEKEWKGYEDSTHLLEFKDPIEGSSMAFSSTMQHDMSMINVAEEGFTNLLLDNSNSDDPSLSPESGVECNTCDGNGNGSGGSDFYEDNKNYWNNILNLVNSSPSDPLF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4554 318 MobiDBLite consensus disorder prediction 169 205 - -
Psa3g4554 318 MobiDBLite consensus disorder prediction 169 210 - -
Psa3g4554 318 CDD SANT 69 112 IPR001005 -
Psa3g4554 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa3g4554 318 Gene3D - 69 116 - -
Psa3g4554 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa3g4554 318 CDD SANT 16 61 IPR001005 -
Psa3g4554 318 Gene3D - 13 66 - -
Psa3g4554 318 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 198 314 - -
Psa3g4554 318 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 192 - -
Psa3g4554 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa3g4554 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa3g4554 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa3g4554 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa3g4554 318 SMART sant 66 114 IPR001005 -
Psa3g4554 318 SMART sant 13 63 IPR001005 -
Psa3g4554 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa3g4554 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 192 - -
Psa3g4554 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 198 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4554 Psa-Chr3 423693451 423696407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4554 1 315 MYB Transcription Factor Family AT3G01140 56.901 1.22e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g4554 Myb_DNA-binding 6.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4554 K09422 - gmx:100781637 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1632 1 112566004 112568956 Psa3g4554 3 423693451 423696407 PCT