Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4551 ATGCATTCCTCTAATTCTGTGGAAGGTTCACCATCAAGTTTGAGAAAAGGTGCATGGAGTCAATACGAAGATGAACTTCTCAAAGATTGTGTTCAACGTTATGGAGAAGGAAAATGGCACTTAGTTCCTCAAAGAGCAGGATTGAAGAGATGTCGCAAGAGTTGTAGATTGAGATGGTTGAATTATTTGAAGCCAAATATTAAGAAGGGAGATTTTAGTGAAGATGAAGTTGATTTGATGATCAAATTGCATAATCTTTTGGGAAACAGATGGTCCTTGATTGCTGGAAGACTCCCTGGAAGAACTTCAAATAATGTAAAAAACTATTGGAACACAAACATGCGAAGCAAAGAACATTCTTCCAAGAAAGACAAGAACAAAACGAAGGAAGAGATAGAAAAAGTGAAAAAATCCCATGAAGTGATTAAACCTCAACCACGAACTTTCACAAAATCGTTGTTGGGAGTGAATAAGTTCATTGGTTCAGATGATAATTCTTCCAAAGTTACTATGAATGAAGGTGAAACTTCATCAAGAACAAGTAATTGGTGGGAAACTTTTTTATTAGATGACAATGAAGATAATAATCACTTATTGCAAACGGGCTTTTGGAATGATCAAGAGCTTAATTCAATAACAACAAATGCATTTGACTTTTTTACTGAAGGTCAAACTTGGGGTGATTTTCTTGCTCAATTTTGA 702 0.3504 MHSSNSVEGSPSSLRKGAWSQYEDELLKDCVQRYGEGKWHLVPQRAGLKRCRKSCRLRWLNYLKPNIKKGDFSEDEVDLMIKLHNLLGNRWSLIAGRLPGRTSNNVKNYWNTNMRSKEHSSKKDKNKTKEEIEKVKKSHEVIKPQPRTFTKSLLGVNKFIGSDDNSSKVTMNEGETSSRTSNWWETFLLDDNEDNNHLLQTGFWNDQELNSITTNAFDFFTEGQTWGDFLAQF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4551 233 Gene3D - 16 68 - -
Psa3g4551 233 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Psa3g4551 233 SMART sant 68 116 IPR001005 -
Psa3g4551 233 SMART sant 15 65 IPR001005 -
Psa3g4551 233 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 13 173 - -
Psa3g4551 233 MobiDBLite consensus disorder prediction 113 137 - -
Psa3g4551 233 MobiDBLite consensus disorder prediction 116 137 - -
Psa3g4551 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Psa3g4551 233 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Psa3g4551 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 173 - -
Psa3g4551 233 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Psa3g4551 233 Gene3D - 71 144 - -
Psa3g4551 233 CDD SANT 18 63 IPR001005 -
Psa3g4551 233 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Psa3g4551 233 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Psa3g4551 233 CDD SANT 72 114 IPR001005 -
Psa3g4551 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4551 Psa-Chr3 423238897 423240283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4551 10 191 MYB Transcription Factor Family AT1G66370 49.296 5.90e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g4551 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4551 - K16166 gmx:100781091 270.011