Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4531 ATGGGTTGTGTGAACTCCAAGAAAGCTCTAACAGGAGGAACCAACACGGTTTCTCCTGTTGCACCTTATGTTTATGCAACGAGTTCGCGAAAAAGGAGCAATGGTTCTGGTAGAAGCATGGTGGTGGAGGCTTGTTCTTCTTCTAGAGGACATTCTGGTGTTCTTGTGACACAACAACAACAACAACAACAACAACAACAACAGGCTGACCTGAAAAAACCGGAAGAACGGAAAAAGGGAGATTTGAATGTGAAGATTGGTTTGTCACATAGGTTTGTTGAAGGTGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTTACTTCTTTTGCTGGTGAAGCCATTCATGGTTTGGTTCCTCTCAAAACTGATTCTTTTGAGAAACTAGATAAGGTTGGACAAGGTACATATAGCACTGTTTTCAAAGCTCGTGAAGTCGAGACAGGAAAGATGTTTGCGTTGAAGAAGGTACGACTTGACACACTTCAACCGGAGTGCATTAGGTTCATGGCGCGGGAGATCGTAATTCTCCGCACACTTGACCACCCTAACATCATGAAATTAGAGGGTATAGTCACTTCACAATTATCAAATAGTATATACCTTGTATTCGAATACATGGAGCATGATCTCGCTGGCCTAACATCTAACCCCGATATCAAGTTCACAGATTCACAGATTAAGTGTTACATGAGACAGCTATTTAGTGGAATCGAGCACTGTCACCTACGAGGTATCATGCACCGAGACATTAAAGTATCGAACATATTAGTTAACAATGAAGGAATTCTAAAAATCGGAGACTTTGGATTAGCAAACACCATTAGCCAAAATAGCAAACATCCTTTAACAAGCCGTGTGGTGACTCTATGGTATCGTCCTCCTGAGCTTTTGATGGGATCAACAAACTATGGAGTTACAGTCGATCTCTGGAGCGTAGGGTGTGTGTTTGCCGAACTTTTTCTAGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTGCACAAAATATTTAAGCTTTGCGGGTCTCCGCCCGAAGAGTTTTGGAAAAAGAGTAAGCTTCCGCTTGCCACAATGTTTAAGCCTCAGACGAGTTACGAAAGCTCGCTTGCGGAGAGGTGTAAAGGTCATATTCCTCTATATGCTGTGAATCTACTTCAGACCTTACTCTCCATTGATCCATCCAAACGCGGTACGGCCTCTTCCGCGCTTATGTCAGAGTATTTCAACACCGCACCGTATGCTTGTAATCCATCACTCCTGCCAAAATATCTACCAAGCAAAGAAATGGATGCCAAACTTAGGGATGACATGCAAAGGAAAAAGAATGGAGGTAAAGTGCGAGAACGAGATGCGGTGACGTCTGGAAGGCAAAGACGGGCACATAAAGCTGTGCAGGATCCTCACAATGTCAGCAAACCAGCGAAAGAGAATACTTCTCTAAACGCTGGTAAAGACGGTAAAGAGGGCGATGGTAAACCACATCATACAAAGGGAAAAGGAGGAGCTACGCACAAAGAGCAACAGAAACATTTGTATGATGCAAAATCAGACACTGCAGAAAAGATCAACGGTTACAACGGCTACAGCGCGTACACAGGACCGACACAAGTCTCAGGATCTAGTGGCTTTACGTGGGTGAAAAGACGAAAACCAGAAGCTTCATCAATATTATCAGACGGCTCAAGAAGCAAAATCAGCGCAATGGATCCAACCTTTGCGAAAGACACTTATGAATTAACGAAACACAGGATGGACGTTTCAGAAAGGAAACATAATAATCACAATGCAAGCCATCGCGACGAGACTTCCAAGTACGCACAACCAAAGTACCCGGGTCGTAATGTTCAATCCGGATCATTTGATGTAGCTGATATATACAGTTCCAATTATTACATGGATTTTGATCTCGCAGATAAACCGGATACTCATATAAACGCACAGGACCATACAAAATACGGTGAACCTGTGGAGCTATCAGTACCAACTATGACCGAAACAAATAAAAATGACGAGTTAAATTGGAACGAAAATACTAAGTGGCGACAATCTCTTCGTAAATCAAGGTTGGGAAGAGACAAATGA 2088 0.4325 MGCVNSKKALTGGTNTVSPVAPYVYATSSRKRSNGSGRSMVVEACSSSRGHSGVLVTQQQQQQQQQQQADLKKPEERKKGDLNVKIGLSHRFVEGEQVAAGWPSWLTSFAGEAIHGLVPLKTDSFEKLDKVGQGTYSTVFKAREVETGKMFALKKVRLDTLQPECIRFMAREIVILRTLDHPNIMKLEGIVTSQLSNSIYLVFEYMEHDLAGLTSNPDIKFTDSQIKCYMRQLFSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTISQNSKHPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKSKLPLATMFKPQTSYESSLAERCKGHIPLYAVNLLQTLLSIDPSKRGTASSALMSEYFNTAPYACNPSLLPKYLPSKEMDAKLRDDMQRKKNGGKVRERDAVTSGRQRRAHKAVQDPHNVSKPAKENTSLNAGKDGKEGDGKPHHTKGKGGATHKEQQKHLYDAKSDTAEKINGYNGYSAYTGPTQVSGSSGFTWVKRRKPEASSILSDGSRSKISAMDPTFAKDTYELTKHRMDVSERKHNNHNASHRDETSKYAQPKYPGRNVQSGSFDVADIYSSNYYMDFDLADKPDTHINAQDHTKYGEPVELSVPTMTETNKNDELNWNENTKWRQSLRKSRLGRDK* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4531 695 CDD STKc_CDK9_like 125 410 - -
Psa3g4531 695 Gene3D Transferase(Phosphotransferase) domain 1 208 449 - -
Psa3g4531 695 MobiDBLite consensus disorder prediction 439 471 - -
Psa3g4531 695 MobiDBLite consensus disorder prediction 52 69 - -
Psa3g4531 695 Pfam Protein kinase domain 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4531 695 ProSiteProfiles Protein kinase domain profile. 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4531 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Psa3g4531 695 MobiDBLite consensus disorder prediction 439 514 - -
Psa3g4531 695 PANTHER CELL DIVISION PROTEIN KINASE 83 588 - -
Psa3g4531 695 MobiDBLite consensus disorder prediction 52 80 - -
Psa3g4531 695 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Psa3g4531 695 SUPERFAMILY Protein kinase-like (PK-like) 119 415 IPR011009 -
Psa3g4531 695 Gene3D Phosphorylase Kinase; domain 1 116 207 - -
Psa3g4531 695 SMART serkin_6 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4531 695 MobiDBLite consensus disorder prediction 483 514 - -
Psa3g4531 695 PANTHER CYCLIN-DEPENDENT KINASE 83 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4531 Psa-Chr3 422121214 422125683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4531 122 451 Core Cell Cycle Gene Families AT5G10270 46.087 1.34e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa3g4531 Pkinase 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4531 - - lja:Lj1g3v2982400.1 923.694