Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4530 ATGTCCACCGCCAATCCCTCCGACACCGACACGGCGTCTCCGCCATCTCGTCCGACCATCACGCTCCCGCCTCGTCCTTCCGTCGAAGCATTCTTCGCCGGTGCCGCTAGTCCTGGACCGATGACACTGGTTTCAAGCTTCTTCGCTACTGAATCCGCTACTTTCTCTCAGCTTCTCGCCGGAGCTATGGCTTCTCCGCTTGCGTACTCCTCCGCCGCGGCGGAGAATTACTTCGTTAAAGAAGATGATGTGGTGAACAGGAATTCGGGGTTTAAACAGAGTCGACCGATGAACTTGATTGTTGCGCGGTCACCGGTTTTTACTATTCCGCCGGGTTTGAGTCCGTCAGGGTTTCTTAACTCGCCTGGGTTCTTTTCTCCACAGAGCCCCTTTGGGATGTCACACCAACAGGCCTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATAATATGCACATGCAACCTGAATATCAGCTGGTCTCATTAGAACCTCCCACCGAACGACTGATAGAGCAGCCGTCTTTTACTCGAAATGAAGCTTCAGAGCAGCAAGTGGCAGCGCCTGTATCAGAATCTAGAAATGCTCAAATGGAAACGTCGGAAGTTACTCATTCTGATAAAAAATATCAACCACCTTCCCTACCGATTGACAAACCTGCAGATGATGGCTACAACTGGCGCAAGTATGGACAGAAGCAGGTTAAGGGGAGTGAGTATCCGCGGAGCTACTACAAATGCACGCATCTGAATTGTCCCGTCAAGAAAAAAGTTGAGCGTGCCCCTGACGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAATCATGAGAAGCCTCAGGTAAATAGGCGCGTCAAAGAAAATAGTGATGTGAATGGAAATGCAAACGTTCAAACTAACTCAAACTCACAAGGTTGGTTTGGAAATTCAAACAAAACTAGTGAAAGTATACGTGATTGTTCAGTGCCTGAAAGTGACCTGATCTCCAATCAAGGGGCTTCTAGGCCACTACCGGGATCAAGTGAAATTGTGGAAGTGGATGATGCAGACAATAAGGAAGAGGGAGGCGACTCTGGGCCAAACCCAAAGAGAAGGAGCATTGAGCCTGTGGTTGCTGAAGCACCTGCGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTAGATGATGGCTACAGGTGGAGAAAGTACGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAGTGCACTAGTGCAGGGTGCAACGTGCGCAAACACGTTGAGAGAGCATCAACGGACCCAAAAGCTGTCATAACTACGTACGAGGGAAAACATAATCACGATGTCCCTGCTGCTAGAAACAGCAGTCACAATACAGCTAATAGCAATTCAATGTCATCAAAGCCACAGGCTAGGGTGCCAGAGAAACATCCTTTGCTTAAAGATATGGAATTCGGAAACAACGATCAGAGACCTGTACATTTACGCTTAAAAGAAGAGCAAATCATAGTATAA 1545 0.4744 MSTANPSDTDTASPPSRPTITLPPRPSVEAFFAGAASPGPMTLVSSFFATESATFSQLLAGAMASPLAYSSAAAENYFVKEDDVVNRNSGFKQSRPMNLIVARSPVFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQLVSLEPPTERLIEQPSFTRNEASEQQVAAPVSESRNAQMETSEVTHSDKKYQPPSLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQVNRRVKENSDVNGNANVQTNSNSQGWFGNSNKTSESIRDCSVPESDLISNQGASRPLPGSSEIVEVDDADNKEEGGDSGPNPKRRSIEPVVAEAPASQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNSMSSKPQARVPEKHPLLKDMEFGNNDQRPVHLRLKEEQIIV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4530 514 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 Gene3D WRKY domain 217 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 Gene3D WRKY domain 385 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 MobiDBLite consensus disorder prediction 179 202 - -
Psa3g4530 514 MobiDBLite consensus disorder prediction 1 16 - -
Psa3g4530 514 MobiDBLite consensus disorder prediction 299 382 - -
Psa3g4530 514 ProSiteProfiles WRKY domain profile. 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 MobiDBLite consensus disorder prediction 299 340 - -
Psa3g4530 514 MobiDBLite consensus disorder prediction 1 23 - -
Psa3g4530 514 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 MobiDBLite consensus disorder prediction 179 213 - -
Psa3g4530 514 MobiDBLite consensus disorder prediction 457 484 - -
Psa3g4530 514 PANTHER WRKY PROTEIN 12 513 - -
Psa3g4530 514 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 513 IPR044810 GO:0003700
Psa3g4530 514 MobiDBLite consensus disorder prediction 462 480 - -
Psa3g4530 514 SUPERFAMILY WRKY DNA-binding domain 222 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g4530 514 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4530 Psa-Chr3 422082754 422087584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4530 6 512 WRKY Transcription Factor Family AT2G03340 51.107 1.26e-143 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa3g4530 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4530 - - gmx:100796679 762.681