Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4519 ATGGGGTTGAATCAAACAAAGCAGGGACCACCCAAAATCAATAGTCCAACAAGTTTGGAAATACATCATCGCATGATCCATTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAAAGGAGAAGAATTCTTATTGCTGGCTATGATCTTGACATGTCCTATATCACAGATAGAGTTTTGGCAATGTCATTTCCTGCAGAACGTATGAGAGCAGTGTACAGAAATCCTCTCTGGCAGGTTAAATCTGTGTTGGATATGAGACATCATGAACATTATAAGGTCTATAATCTGTGTATAGAAGAAAGCTATGATCCAGCACACTTCTATGGTCGAGTGGAAGCATACCCTTTTGATGACAATCATGTGCCACCTCTTCATATGGTTAAAGATTTCTGCGAAAGTGTAGATTCATGGCTGTCAAATGACCCAAGAAATATTGCTGTTATTCATTGCATGGCGGGTAAAGGTAGAACTGGTTTAATGGTGTCAGCATACCTAACTTATTGCGGCATGTCAGCAGATGATGCTCTTCAATTATATGCAGATAGAAGAACAACAAATAATGAAGGAGTATCAATACCGAGCCAACGTCGTTATGTAGGGTATTGGGAAAGTATGCTTTCTGTCCCTAGAGGAATTGGATACGAATCTCCGAGTGTGAATTTGCCTCAACCATGTAGCAGAGAATTACGGCGAATCCGATTGTACGATACTGCAAACATCGACACAGTTTTCTTCGTTATATCAGAACTGCAGGAGATTCCGAACCAGGTCTACCGTCCAGCCATCGAGATTTGTAGGAGCTGCTGTAGAGAGATTAAGAAAGGTTATCAAAGAACAAACAGTCCGCGCTATTATATTTCTATTCCCGAAGGTGACGAAGATGGAAAACAATCGGAAATAGAAGAACCTCGTGTCGTAGTTCAAATGGATACTGAAACTCCTGCGATATACCAGAAATCTTGTTTGGATCATTATTTTGATAAACCTATACAGGTAACGGGAGATGTTCGTGTGATATTCTATGAGAAAATGATCGGAGGCCGTCTTTTCTACTGCTGCTTTAATACAGCTTTTATTAGGAACGGCTTACTACAGCTCACAGTACAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCGATTTGTGGACCTACCTTCTGCGTCGAGTTATTGTTTGGACCTGCGAACACGGGATATACGTCTTCAAATATATCCCTAGGCGAAAATTTCACCGATGATTCATTATAA 1257 0.4033 MGLNQTKQGPPKINSPTSLEIHHRMIHYLTKNFIRNLVSKQRRRILIAGYDLDMSYITDRVLAMSFPAERMRAVYRNPLWQVKSVLDMRHHEHYKVYNLCIEESYDPAHFYGRVEAYPFDDNHVPPLHMVKDFCESVDSWLSNDPRNIAVIHCMAGKGRTGLMVSAYLTYCGMSADDALQLYADRRTTNNEGVSIPSQRRYVGYWESMLSVPRGIGYESPSVNLPQPCSRELRRIRLYDTANIDTVFFVISELQEIPNQVYRPAIEICRSCCREIKKGYQRTNSPRYYISIPEGDEDGKQSEIEEPRVVVQMDTETPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNGLLQLTVQDLDKVGKKGRSICGPTFCVELLFGPANTGYTSSNISLGENFTDDSL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4519 418 Pfam Tyrosine phosphatase family 144 184 IPR026893 GO:0004721
Psa3g4519 418 Gene3D - 264 400 - -
Psa3g4519 418 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 209 IPR029021 -
Psa3g4519 418 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 8 400 - -
Psa3g4519 418 Pfam C2 domain of PTEN tumour-suppressor protein 320 395 IPR014020 -
Psa3g4519 418 ProSiteProfiles C2 tensin-type domain profile. 243 398 IPR014020 -
Psa3g4519 418 CDD PTP_PTEN 53 206 IPR045101 GO:0016791
Psa3g4519 418 Gene3D Protein tyrosine phosphatase superfamily 29 211 IPR029021 -
Psa3g4519 418 ProSiteProfiles Phosphatase tensin-type domain profile. 43 212 IPR029023 -
Psa3g4519 418 PANTHER BNAC03G16750D PROTEIN 8 400 - -
Psa3g4519 418 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 305 397 IPR035892 -
Psa3g4519 418 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 131 186 IPR000387 GO:0016311|GO:0016791
Psa3g4519 418 ProSitePatterns Tyrosine specific protein phosphatases active site. 151 161 IPR016130 GO:0016311|GO:0016791
Psa3g4519 418 SMART PTEN_C2_2 225 397 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4519 Psa-Chr3 421826617 421828757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4519 1 402 Protein tyrosine phosphatase (PTP) family AT5G39400 66.584 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4519 K01110 - gmx:100809938 722.62