Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4516 ATGGACATAACCCCAACACAAACAACAACAACAACACCATTACCAACCATTTTAACAACATCTACAACAACCTTAACAAAATCACCAGAACATGAAACCGAAACACCCACCAAAATCACCACTCCCACTACAACCACAACACCAAAAATCTCATCTTTTTCCAACGGTGTTCTCAAACGCCTCCACAACCACCACCACCACCACCTTAACAACCACCACAACAACCTCGTAACTGTTACTTACAAAGAATGTCTCAAAAACCACGCAGCAAACTTAGGTGGTCACGCCCTCGACGGCTGCGGCGAATTCATGACATCCCCCACCGCAACATCCGCCGACCCAACATCCTTAAAATGCGCTGCCTGTGGCTGTCACCGTAATTTCCACCGCCGTGAACCCGAAGAGCCACATCTCTCCACCACCACGCATGTAATCGAATATCAACCTCACCACCGTCATCAGCCTCTCCCACCGCCGCCGTTCTCCACCCGCAGCCCGAATTCATCCTCTCCACCGCCGATCTCCTCAACTTACTACCCCTCCGCCCCTCACATGCTCCTCGCCCTCTCCACCGCCTTGCCGGAAAACGTCTCAGCCCCTAACTCCGCCATGATCTCTCCTGGCTCCCACACTAGAAAACGCTTCCGAACAAAATTCACTCAAGATCAGAAAGAAAAGATGCTGAAATTCGCTGAGAAAGTTGGTTGGAAGATGCAGAAAAAAGACGAAGATTATGTTCATGAATTCTGCAACGAAATCTGTGTTGATCGAAGTGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTTTCGCTAAAAAAGACAACAACATCAACAACCTCAACGACATCGACAACAACCTCAACAACATCAACAATGAGGTTAATGTTGGTGTTAAGAGTTTCTTGCCTCTTGAGAATGAAGAACACAACATCAATAACATCAACAAAGGTGAAACAAAACTTGAGATTCATACTCATAATCATAATCATAATCATCACTACCAGAATGATGTTGGAGTAACTGTTCGTGCTAATGGTTCATCTTCTTCTTGA 1056 0.4574 MDITPTQTTTTTPLPTILTTSTTTLTKSPEHETETPTKITTPTTTTTPKISSFSNGVLKRLHNHHHHHLNNHHNNLVTVTYKECLKNHAANLGGHALDGCGEFMTSPTATSADPTSLKCAACGCHRNFHRREPEEPHLSTTTHVIEYQPHHRHQPLPPPPFSTRSPNSSSPPPISSTYYPSAPHMLLALSTALPENVSAPNSAMISPGSHTRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDEDYVHEFCNEICVDRSVLKVWMHNNKNTFAKKDNNINNLNDIDNNLNNINNEVNVGVKSFLPLENEEHNINNINKGETKLEIHTHNHNHNHHYQNDVGVTVRANGSSSS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4516 351 Coils Coil 274 294 - -
Psa3g4516 351 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 302 - -
Psa3g4516 351 SUPERFAMILY Homeodomain-like 202 273 IPR009057 -
Psa3g4516 351 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 132 IPR006456 -
Psa3g4516 351 MobiDBLite consensus disorder prediction 1 45 - -
Psa3g4516 351 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 80 132 IPR006456 -
Psa3g4516 351 ProSitePatterns Zinc finger C2H2 type domain signature. 119 143 IPR013087 -
Psa3g4516 351 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 302 - -
Psa3g4516 351 MobiDBLite consensus disorder prediction 152 167 - -
Psa3g4516 351 Pfam ZF-HD protein dimerisation region 79 133 IPR006456 -
Psa3g4516 351 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 212 269 IPR006455 -
Psa3g4516 351 Gene3D - 199 273 - -
Psa3g4516 351 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4516 Psa-Chr3 421577515 421580165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4516 17 268 ZF-HD Transcription Factor Family AT5G15210 50.781 1.31e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa3g4516 ZF-HD_dimer 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4516 - - gmx:100789447 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4516 3 421577515 421580165 Psa3g4516 3 421577515 421580165 ECH