Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4496 ATGGAGGTTTTTGACAGAAGATCATCATCATGCAATTTGTTCAATGTTACAAGTGAGCTTCAAAATCATATAACACAAAAGCAATCAATGTACCCTCCTGGCTTTCCAAGAAAGGTATTTGCAGAGGTTATAGGGACATATTTGTTGGTGTTTGTGGGGAGTGGGAGTGCTGCTATGAATGCAATTGATGAAAACAAAGTAACAAAATTGGGAGCTTCACTTGCAGGTGGATTCATTGTAACTGTTATGATTTATGCAATTGGACACATCTCTGGTGCACATATGAATCCAGCTGTTTCCTTAGCTTTTGCCACCATTACTCATTTTCCTTGGAAACAGAAGTAG 345 0.3855 MEVFDRRSSSCNLFNVTSELQNHITQKQSMYPPGFPRKVFAEVIGTYLLVFVGSGSAAMNAIDENKVTKLGASLAGGFIVTVMIYAIGHISGAHMNPAVSLAFATITHFPWKQK* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4496 114 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Psa3g4496 114 Pfam Major intrinsic protein 35 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g4496 114 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g4496 114 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g4496 114 Gene3D Glycerol uptake facilitator protein. 5 113 IPR023271 -
Psa3g4496 114 SUPERFAMILY Aquaporin-like 35 113 IPR023271 -
Psa3g4496 114 PANTHER AQUAPORIN NIP2-1 24 113 IPR034294 -
Psa3g4496 114 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 24 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4496 Psa-Chr3 420092382 420093050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4496 35 113 Major Intrinsic Protein MIP AT4G19030 49.367 8.19e-22 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4496 K09874 - gmx:100788071 141.739