Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4487 ATGGCAAGTAAAATTGCACTTATTTTCTTGGTTTTGGCAATTGCCATTCCATGCTTTGAAGCTGGTATTGCTAAGTTTGATGATTATCTTAAAGCACAGGCTAGTTTAGCTCGTGAGATTGCTCTTAAGTCTTATATTCCCAATCCAGAAAATATTACAGCTGAGATCAATCATCATGTTCATATGGCAATGGAAGAGTCATTGGCGGAGGAATATTCAAATAACACAAGGAGGGAACTAAGAGGACATGCGCGTCGCGGTGGTAAAGCACAACCTTGCATGGCCTCTAATCCGATCGACAGTTGTTGGAGGTGCAACAAGGACTGGGCAAAAGATCGTCAAAAGTTAGCCAAGTGTGGAAAAGGTTTTGGTAGAAAGGCCGTAGGAGGACTTGGCGGAAAATTCTATGTTGTCACAGATCCTTCCGACAACGATATGGTTAACCCAAAACCTGGCACTCTCCGTTACGGTGCCACTCGAAAGGGACCACTTTGGATTATTTTCGCACATAGCATGGTCATTAGATTGAATCAAGAGTTGATGGTTTCTTCCGACAAGACAATCGACGGTCGTGGTGCCGAAGTTCACATTAGGGATGGTGCTGGAATTACAATGCAATTCGTGAACAATGTCATTATTCATGGTCTTCACATAAAGAACATTAAGGCTAAGAATGGCGGTCCAACAATTCTTAGTCAAGGAAACCGTTTCATTGCTCCTAACAACAATGCTGCAAAGACAGTGACACATAGAGATTATGCAACAGAAGATGTTTGGTCTAAATGGCAATGGAGATCAGAAGGTGATGTCTTCATGAATGGTGCAACATTTATTCAATCTGGTGCTCCTATTAAGAATCTTCCATTCAAGAAAGGGTATTTGATGAAACCAAGACATGGATCACAAGCTAATAGGCTTACACGCTTTTCTGGCGCAATAAGTTGCAAGGTGGGTAGGCCTTGCTAG 966 0.4224 MASKIALIFLVLAIAIPCFEAGIAKFDDYLKAQASLAREIALKSYIPNPENITAEINHHVHMAMEESLAEEYSNNTRRELRGHARRGGKAQPCMASNPIDSCWRCNKDWAKDRQKLAKCGKGFGRKAVGGLGGKFYVVTDPSDNDMVNPKPGTLRYGATRKGPLWIIFAHSMVIRLNQELMVSSDKTIDGRGAEVHIRDGAGITMQFVNNVIIHGLHIKNIKAKNGGPTILSQGNRFIAPNNNAAKTVTHRDYATEDVWSKWQWRSEGDVFMNGATFIQSGAPIKNLPFKKGYLMKPRHGSQANRLTRFSGAISCKVGRPC* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4487 321 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Psa3g4487 321 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Psa3g4487 321 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Psa3g4487 321 Pfam Pectate lyase, N terminus 23 80 IPR007524 GO:0030570
Psa3g4487 321 PANTHER PECTATE LYASE 228 321 - -
Psa3g4487 321 PANTHER PECTATE LYASE 4 227 - -
Psa3g4487 321 SUPERFAMILY Pectin lyase-like 225 312 IPR011050 -
Psa3g4487 321 Gene3D - 226 314 IPR012334 -
Psa3g4487 321 Gene3D - 96 225 IPR012334 -
Psa3g4487 321 SUPERFAMILY Pectin lyase-like 97 225 IPR011050 -
Psa3g4487 321 PANTHER PECTATE LYASE 18-RELATED 228 321 IPR045032 GO:0030570
Psa3g4487 321 PANTHER PECTATE LYASE 18-RELATED 4 227 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4487 Psa-Chr3 419712013 419713767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4487 225 321 Polysaccharide Lyase AT1G14420 43.137 1.14e-22 96.3