Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4481 ATGTCTAGTCGAAGGTCAAGACAACAATCAGGAGGGTCTACAAGAATCTCTGATGACCAAATTATCGAACTTGTTTGCAAGTTGCGTCAACTTGTTCCTGAGATTCGTAATAGGCGTTCTGACAAGGTACCAGCTTCTACGGTCCTACAAGAAACCTGCAACTATATCAGAAACTTACAAAGAGAAGTTGATGATTTAAGCCTCAGATTGTCTCAGTTGTTGTCCACAATTGATGCTGATAGTCCTGAAGCTTCCATCATTAGGAGCCTGCTTAACCAATGA 282 0.4149 MSSRRSRQQSGGSTRISDDQIIELVCKLRQLVPEIRNRRSDKVPASTVLQETCNYIRNLQREVDDLSLRLSQLLSTIDADSPEASIIRSLLNQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4481 93 Pfam Helix-loop-helix DNA-binding domain 23 60 IPR011598 GO:0046983
Psa3g4481 93 Gene3D - 2 86 IPR036638 GO:0046983
Psa3g4481 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Psa3g4481 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Psa3g4481 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Psa3g4481 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 79 IPR036638 GO:0046983
Psa3g4481 93 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4481 Psa-Chr3 419331490 419334211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4481 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 9.41e-34 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g4481 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4481 - - gmx:100796852 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4481 3 419331490 419334211 Psa3g4481 3 419331490 419334211 ECH
Psa4g3210 4 268014056 268016944 Psa3g4481 3 419331490 419334211 ECH