Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4479 ATGTTTATGATTCTTTCCATTTGGAATTTTGGATGGAACTTGATATTGGGACTAATAGTTTATCTTGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCTTATGATTTAGCTGCACTTAAATATTGGGGGACATCAACTTTCACCAATTTTCAGGTATCAGATTATGAGAAAGAGATAGAAATAATGAATACTATGACTAAAGAGGAGTATTTGGCCACATTAAGAAGAAAGAGCAGTGGATTTTCAAGAGGTGTTTCAAAGTATAGAGGTGTAGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGAAGAGTTTTTGGAAACAAATATCTCTATCTTGGAACCTATAGTACACAAGAGGAAGCTGCTCGAGCTTACGACATAGCTGCGATTGAGTATAGAGGAATTCATGCTGTAACAAACTTTGAATTAAGCAGTTACATAAAATGGTTAAAGCCAGAAAGCACCATAGAACCAAACCATGAATCAAAAACACTACAAAAAGATTCTCAAACAATAGCGTCGCCGAATAACTCGACTCTATTACAAGAATCAAAGTTATTAGCCCTTCAAAAGAGCTTTTTCCTTCCAGATTATAATCTGAATTCTACCGAAAAGCAAGAATCATCAATTGAAAACAAAAACTACAGTTTCTTGAGCAACAAGTCAACTTCTCCCACCGCGCTTAGTCTTCTCCTTCGATCTTCGTTGTTTAAGGAATTACTTGAAAAGAATTCAAATGTGTCTGAGGACGAAGTCGCGAAAGAGCAACAGATCGCGAGTGATGATGAACTCGGAGAAATCTTCTACGATGGTATTGGAAATATCTCATTTGACTTTGATCCCAATAGATGCAGCATAGAATTGCAAGAAAGAGACTTACATTCAATATTTTTTACATAG 912 0.3629 MFMILSIWNFGWNLILGLIVYLGAYDEEESAARAYDLAALKYWGTSTFTNFQVSDYEKEIEIMNTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESTIEPNHESKTLQKDSQTIASPNNSTLLQESKLLALQKSFFLPDYNLNSTEKQESSIENKNYSFLSNKSTSPTALSLLLRSSLFKELLEKNSNVSEDEVAKEQQIASDDELGEIFYDGIGNISFDFDPNRCSIELQERDLHSIFFT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4479 303 SUPERFAMILY DNA-binding domain 87 147 IPR016177 GO:0003677
Psa3g4479 303 SUPERFAMILY DNA-binding domain 19 54 IPR016177 GO:0003677
Psa3g4479 303 Pfam AP2 domain 87 138 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 CDD AP2 87 148 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Psa3g4479 303 Gene3D AP2/ERF domain 14 54 IPR036955 GO:0003700|GO:0006355
Psa3g4479 303 ProSiteProfiles AP2/ERF domain profile. 20 52 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 SMART rav1_2 9 58 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 23 282 - -
Psa3g4479 303 CDD AP2 12 54 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Psa3g4479 303 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4479 Psa-Chr3 419261518 419263389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4479 1 178 AP2-EREBP Transcription Factor Family AT3G54320 59.794 2.77e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g4479 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4479 - - lja:Lj1g3v2952280.1 422.55