Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4443 ATGGGGTTTAGGGATAATGCAATTAAAGCAGGGAGTTTGGATGTGGGGAAGAAGTCAAAGGGAAAGATGAAGAAGGATGGTGATGAGAAGGAAATTGGGTGTTGTGTTAAATTTAATTGCTTTGGAAAGTGTATACCTTCAAGATCAAAAGTTGATTCTTCTAAAAGTGGCACCACAAGTGCTTATAGTGTGGATAAAGCATCTGCATATGAGAAAAGGGAAAGAGAAAGGAGTGCTCCTCCGGGATCGTCGACAACTAGTAATGCAGAAAGTATCCCTTCTACTCCAAAGTTCAGTGAGGAATTGAGGGTTTCTTCTGATTTGAGAAAATTCACATTCATTGAGCTAAAGATGGCGACTAGGAATTTTCGACCCGAGAGTCTTCTTGGTGAGGGAGGATTTGGTTGTGTCTTCAAAGGTTGGATTGAAGAGAACGGAACTGCACCTGTGAAACCAGGTACTGGACTTACCGTTGCGGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTTGGTGATATTGTTCACCCGAATCTGGTTAAATTGATTGGTTTTTGTATCGAAGATGATCAAAGATTATTGGTTTATCAGTTTATGCCTCGAGGAAGTTTGGAGAATCACCTCTTCAGAAAAGGGTCCTTACCTCTTCCGTGGGCGATTAGAATGAAAATTGCGCTCGGTGCAGCAAAAGGACTTCATTTTCTCCACGAAGAAGCTCAAAGGCCTATAATCTATCGTGATTTCAAGACGTCTAATATTCTATTGGATGCGGAATATAATGCAAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTCAAGGTGAAAATACACATATATCAACAAGAGTTATGGGAACATACGGCTACGCAGCTCCTGAGTATGTGATGACGGGTCATTTGACATCAAAAAGCGACGTCTATAGTTTTGGCGTAGTGCTACTTGAAATGCTCACCGGTCGACGAGCTGTTGATAAGAATAGACCGAACGGGGAACACAACCTTGTCGAGTGGGCAAGACCTGTACTAGGAGAACGAAGATTATTATTCCAGATAATCGATCCTCGTCTCGAAGGTCACTTCTCAGTGAAAGGAGCACAAAAAGCCGCCCAACTAGCCGCTCAATGCCTTAGCCGTGATCCAAAACTCAGACCTATGATGAGTGAAGTTGTTCAAGCTCTAAAGCCTCTGCAAAACCTCAAAGACATGGCTATCACGTCGTATCACTTTCAAGTCGTGCGAGTAGATCGCACGATGTCGATGCCAAAAAACGGTACGCAAACACAGTTAACATCTTTATCAAAGAAAGGTCAACCTATGAGGATATTGTCAAGCCCAAATGGTCAAAACGGTTCTCCGTATCGTCATTACATTAAGTCGCCTAAACCTAACGGATAA 1428 0.4286 MGFRDNAIKAGSLDVGKKSKGKMKKDGDEKEIGCCVKFNCFGKCIPSRSKVDSSKSGTTSAYSVDKASAYEKRERERSAPPGSSTTSNAESIPSTPKFSEELRVSSDLRKFTFIELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRKGSLPLPWAIRMKIALGAAKGLHFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKLRPMMSEVVQALKPLQNLKDMAITSYHFQVVRVDRTMSMPKNGTQTQLTSLSKKGQPMRILSSPNGQNGSPYRHYIKSPKPNG* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4443 475 Gene3D Transferase(Phosphotransferase) domain 1 209 426 - -
Psa3g4443 475 MobiDBLite consensus disorder prediction 64 98 - -
Psa3g4443 475 CDD STKc_IRAK 129 407 - -
Psa3g4443 475 Gene3D Phosphorylase Kinase; domain 1 103 208 - -
Psa3g4443 475 PANTHER OS01G0588500 PROTEIN-RELATED 61 467 - -
Psa3g4443 475 PANTHER RECEPTOR-LIKE KINASE PLANT 61 467 - -
Psa3g4443 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Psa3g4443 475 MobiDBLite consensus disorder prediction 80 98 - -
Psa3g4443 475 SUPERFAMILY Protein kinase-like (PK-like) 97 404 IPR011009 -
Psa3g4443 475 Pfam Protein kinase domain 126 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4443 475 ProSitePatterns Protein kinases ATP-binding region signature. 129 161 IPR017441 GO:0005524
Psa3g4443 475 ProSiteProfiles Protein kinase domain profile. 123 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4443 475 MobiDBLite consensus disorder prediction 453 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4443 Psa-Chr3 417682224 417686103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4443 88 420 Glycoside Hydrolase AT3G07070 51.304 5.83e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa3g4443 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4443 - - aprc:113861691 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1730 1 123133525 123137003 Psa3g4443 3 417682224 417686103 PCT