Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4434 ATGGTGAAATTCCTCAAGCCAAACAAAGCCGTCATCGTCCTTCAAGGCCGATACGCAGGGAAGAAGGCTGTCATCGTGAAGAATTTTGATGATGGAACCCGTGAACGTGCTTATGGTCATGCCTTGGTTGCAGGGATCAAGAAGTATCCAAGCAAGGTTATCAAGAAGGATTCGGCGAAGAAAACTGCTAAGAAATCGCGTGTGAAGGCTTTTGTGAAACTCGTTAATTATCAACATCTGATGCCTACTCGCTACACTTTGGATGTTGATCTTAAGGAGGTTGTTACCAATGATGCTCTTCTGAGTAAGGATAAGAAGGTTACTGCTTTGAAAGAGGCAAAGAAGAGATTCGAGGAGAGGTTTAAGACTGGGAAGAACAGGTGGTTCTTCACTAAGCTCAGGTTTTGA 408 0.4387 MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRERAYGHALVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTNDALLSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4434 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Psa3g4434 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 - -
Psa3g4434 135 CDD KOW_RPL27 6 88 IPR041991 -
Psa3g4434 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Psa3g4434 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Psa3g4434 135 Gene3D - 1 135 IPR038655 -
Psa3g4434 135 Pfam KOW motif 7 32 IPR005824 -
Psa3g4434 135 SMART kow_9 4 31 IPR005824 -
Psa3g4434 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4434 Psa-Chr3 417195045 417198655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4434 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 86.667 6.12e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4434 K02901 - mnt:21400722 229.565