Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4419 ATGCAAACAAAAGAATTTAATACACAACTCAATTATTTACTCCCAAATTCCAATCCATCATGCAACTACAACATGTTCCAAACATCTCATCTCCAAAACTTCTCCAACCAACAACTCTATGGTTCTTTCAACCAAACCCCTCTTCAAATCCTCCAAGACTTCAGCCCTCAATCCTCATCCATAAGCAATAACTCGACCTCCGACGAAGCGGACGAGCAAAACAAAGGACTGATCAACGAGAGAAAACATCGAAGAATGATATCGAACCGGGAGTCAGCGCGCCGCTCGCGAATGAGGAAACAGAAACACCTTGATGAGCTTTGGTCACAGGTTGTTTGGCTAAGGAATGAGAATCATAAACTAGTTGATAAGCTGAACAGTTTTTCGGAGTCTCATGATAGAGTTGTGCAAGAGAATGTTCAGTTGAAAGAACAAGCTTCGGAGCTTCGACAAATGGTTTGTGACATGCAGTTGCATGGTTCTTGTCTTCCTTTGAGTCCTCTTGAAGATGCTCCTAGCATGAACTCACCTCATGTTGAATCAATCACAAGTTAA 555 0.4198 MQTKEFNTQLNYLLPNSNPSCNYNMFQTSHLQNFSNQQLYGSFNQTPLQILQDFSPQSSSISNNSTSDEADEQNKGLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHKLVDKLNSFSESHDRVVQENVQLKEQASELRQMVCDMQLHGSCLPLSPLEDAPSMNSPHVESITS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4419 184 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
Psa3g4419 184 PANTHER BZIP TRANSCRIPTION FACTOR 1 181 - -
Psa3g4419 184 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 181 IPR044521 -
Psa3g4419 184 CDD bZIP_plant_GBF1 82 133 IPR045314 GO:0003700|GO:0006355
Psa3g4419 184 MobiDBLite consensus disorder prediction 55 98 - -
Psa3g4419 184 Gene3D - 79 134 - -
Psa3g4419 184 Pfam bZIP transcription factor 81 130 IPR004827 GO:0003700|GO:0006355
Psa3g4419 184 MobiDBLite consensus disorder prediction 73 98 - -
Psa3g4419 184 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 142 IPR004827 GO:0003700|GO:0006355
Psa3g4419 184 Coils Coil 132 152 - -
Psa3g4419 184 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Psa3g4419 184 SUPERFAMILY Leucine zipper domain 81 130 IPR046347 GO:0003700|GO:0006355
Psa3g4419 184 MobiDBLite consensus disorder prediction 55 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4419 Psa-Chr3 416376606 416378418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4419 21 163 bZIP Transcription Factor Family AT3G30530 57.516 1.17e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa3g4419 bZIP_1 1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4419 - - aprc:113863596 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1467 1 99774035 99774976 Psa3g4419 3 416376606 416378418 PCT