Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4402 ATGTTGGAGCAAAAATTCCTCACCACCACCTCGGCCACCGTCCGGTCCGCGGTCACATGGCCGCGGACATGCGACACGTGCCGCTCCGCTCCATGCGCGGTATTCTGCCGCGCAGATTCAGCGTACTTATGCGCTGGATGCGACGCTCGCATCCACGCAGCAAACCGTGTAGCCTCGAGGCACGAACGCGTCTGGGTCTGCGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTCTGTAAAGCCGACGCTGCTTCCCTTTGCTCCTCATGCGACGCTGATATCCATTCCGCAAACCCGCTTGCCAGCCGCCACCAACGTGTCCCGATTCTTCCGATTTCGGGATACCTTTACGGTCCTCCGACGACCCTTTTAGGTGCTGACGACGAAGGCTTTGTCCGCAGCGGCGGTGACGCGGAGGAAGAGGAGGATGAAGGTGCTGATATGGAAGATGAAAATGAAGCAGCTTCATGGCTTTTGTTGAATCCTTTGAAAAACAACCATCACAATATCAACAACCACAACAACAATAACAATAGCAATGATCATAATCAAGAAGGTAATAATGGATTTTTGTTTAGCGGCGAAGTTGATGAGTATTTGGATCTTGTGGATTGTAATTCTTGTGGTGGTGGTGAAAACACTTTCACCACCAATAATACTCATGATCACGACTATAGTCGTGATCAACAACAACAGCGACAAGATCATTATGGTGTTCCTCAAAAGAACTATGTTGGAGATAGTGTTGTTCCTGTTCAACAGCAACATCTACAGAATTTTCAACTTGGGTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAATGGTGGATCAATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGAGATGCCACAACAATGTCATATTCAAGACCTTCAAAAGGAACAATTGACCTATTTTCAGCTCCTCCTATTCAAATGACTTCTCATTTCTCTCCAATGGACAGAGAAGCCAGAGTCCTAAGGTACCTTGAAAAAAAGAAAACAAGAAAATTCGAGAAAACGATCCGGTACGCCTCGAGGAAAGCCTACGCGGAAACTCGGCCGCGTATCAAAGGTCGGTTCGCGAAACGGACCGACGTTGAAGCTGAAGTCGATCAAATGTTTTCCACAACACTAATTACGGAAGTTGGATACGGAATCGTTCCCTCGTTCGTATAA 1215 0.4757 MLEQKFLTTTSATVRSAVTWPRTCDTCRSAPCAVFCRADSAYLCAGCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVRSGGDAEEEEDEGADMEDENEAASWLLLNPLKNNHHNINNHNNNNNSNDHNQEGNNGFLFSGEVDEYLDLVDCNSCGGGENTFTTNNTHDHDYSRDQQQQRQDHYGVPQKNYVGDSVVPVQQQHLQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMRDATTMSYSRPSKGTIDLFSAPPIQMTSHFSPMDREARVLRYLEKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSFV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4402 404 CDD Bbox1_BBX-like 24 66 - -
Psa3g4402 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 19 403 - -
Psa3g4402 404 ProSiteProfiles Zinc finger B-box type profile. 24 66 IPR000315 GO:0008270
Psa3g4402 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 403 IPR045281 GO:0009909
Psa3g4402 404 SMART bboxneu5 67 109 IPR000315 GO:0008270
Psa3g4402 404 SMART bboxneu5 19 66 IPR000315 GO:0008270
Psa3g4402 404 Pfam CCT motif 334 376 IPR010402 GO:0005515
Psa3g4402 404 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Psa3g4402 404 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Psa3g4402 404 CDD Bbox1_BBX-like 66 109 - -
Psa3g4402 404 ProSiteProfiles CCT domain profile. 334 376 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4402 Psa-Chr3 414219815 414222685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4402 19 403 C2C2-CO-like Transcription Factor Family AT3G02380 54.293 1.27e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa3g4402 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4402 - - qlo:115975874 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4402 3 414219815 414222685 Psa3g4402 3 414219815 414222685 ECH