Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4398 ATGATGAAGCCAACAAGAGTTTTTATAGATTTTCTTTGTTTTGCATTTTTCTTGTTTTGGAGTTCTAATGCTTTGCTTTCTTCTAAAGGTGTAAACTTTGAAGTTCAAGCTTTGATGGGAATAAAAGAGTCTCTAGTGGATCCACATGGTGTTCTTGATAATTGGGATGGTGATGCAGTTGATCCATGTAGTTGGACTATGGTTACATGTTCTAATGAAAATCTTGTCATTGGATTGGGCACTCCGAGTCAAAGTTTATCAGGTACTCTATCTCCAAGCATAGGGAATTTAACCAATCTTCAGATTGTGCTTCTCCAGAATAACAACATAACCGGGTCAATCCCTTCGGAATTTGGAAAACTTCCTAAGCTTCAGACTCTTGATCTCTCTGACAATTTCTTCAGCGGTGAAATTCCTCCTTCTCTCGGACACTTGAAAAGCCTTCAATACTTGAGGTTTAATAATAACAGCCTTGTTGGTGAATGTCCAGAATCACTAGCTAACATGACACAACTTTCTTTTCTTGATCTGTCTTACAATAATCTCAGTGGACCTGTACCGAGAATTTTGGCCAAATCATTTAGCATTGTTGGTAATCCTCTTGTTTGTGCTACTGGAAATGAACCAAACTGTCATGGGATGACATTGATGCCAATATCCATGAACTTAAACAATACTAATCTAGATGTTTTACCATCGAGCAAACCAAAAAGTCATAAAATGGCTATAGTCTTCGGCTTGAGTCTGGGATGTCTCTGCATGATAGTTATCGGTTTTGGACTTGTTCTTTGGAGGAGACACAAGCATAATCAACAAGCGTTCTTCGATGTCAAAGACCGGCATCACGAAGAAGTTTACCTTGGAAACTTGAAGAGATTTCCATTCAGAGAACTCCAAGTTGCTACTCACAACTTCAGCAACAAAAACTTAGTTGGAAAAGGCGGTTTTGGAAATGTCTACAAAGGAATTCTCTCGGACGGAACTGCTGTAGCTGTCAAGAGGCTTAAAGATGGAAATGCAATTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCCTCGCGGTACATAGAAATCTGCTTCGACTTTATGGATTTTGCATGACATCGTCCGAACGGCTTTTGGTTTATCCTTACATGTGCAACGGAAGTGTTGCGTCTCGTTTGAAGGGTAAACCCGTCTTGGATTGGGGAACAAGGAAGAACATTGCATTAGGAGCAGCAAGGGGACTACTATACCTTCATGAACAATGTGATCCAAAGATAATCCATAGGGATGTGAAGGCTGCAAACATATTACTTGATAACTTCTGTGAAGCTGTAGTAGGTGATTTCGGTTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTCACAACAGCAGTGCGAGGAACTGTAGGACATATTGCACCCGAATATCTTTCGACAGGACAATCCTCTGAGAAAACTGATGTGTTTGGATTCGGCATTCTTCTCCTTGAGCTGATTACAGGTCAGAGAGCCTTAGAATTCGGAAAAGCTGCTAACCAAAAAGGAGCCATGCTTGATTGGGTGAAGAAAATTCATCAAGAGAAGAAACTCGAACTCCTTGTAGACAAAGATCTAAAGAGCAACTACGACAAAATCGAGCTCGAGGAAACGGTTCAAGTAGCCCTCTTATGCACTCAATATCTTCCAAGCCATAGACCTAAAATGTCAGAAGTTGTAAGAATGCTTGAAGGCGATGGACTAGCTGAGAGATGGGAAGCTTCACAAAGAACAGACACTTCAAAATGGAAACATCATGAATCATCTTTATCAGATAGATACTCTGATCTTACTGATGATTCTGTGTTATTAGTCCAAGCTATGGAGCTTTCAGGACCAAGGTGA 1878 0.4026 MMKPTRVFIDFLCFAFFLFWSSNALLSSKGVNFEVQALMGIKESLVDPHGVLDNWDGDAVDPCSWTMVTCSNENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGSIPSEFGKLPKLQTLDLSDNFFSGEIPPSLGHLKSLQYLRFNNNSLVGECPESLANMTQLSFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGNEPNCHGMTLMPISMNLNNTNLDVLPSSKPKSHKMAIVFGLSLGCLCMIVIGFGLVLWRRHKHNQQAFFDVKDRHHEEVYLGNLKRFPFRELQVATHNFSNKNLVGKGGFGNVYKGILSDGTAVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTSSERLLVYPYMCNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDNFCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDKIELEETVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAERWEASQRTDTSKWKHHESSLSDRYSDLTDDSVLLVQAMELSGPR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4398 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 625 - -
Psa3g4398 625 Pfam Leucine Rich repeats (2 copies) 98 138 IPR025875 -
Psa3g4398 625 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Psa3g4398 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Psa3g4398 625 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 12 625 - -
Psa3g4398 625 Pfam Protein kinase domain 306 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4398 625 SMART LRR_typ_2 121 145 IPR003591 -
Psa3g4398 625 SMART LRR_typ_2 169 192 IPR003591 -
Psa3g4398 625 SMART LRR_typ_2 97 120 IPR003591 -
Psa3g4398 625 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Psa3g4398 625 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4398 625 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Psa3g4398 625 SMART serkin_6 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4398 625 SUPERFAMILY L domain-like 34 231 - -
Psa3g4398 625 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Psa3g4398 625 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Psa3g4398 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4398 Psa-Chr3 413896025 413900609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4398 1 625 Receptor kinase-like Gene Family AT5G16000 77.690 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa3g4398 Pkinase 5.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4398 - - gmx:100798412 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4398 3 413896025 413900609 Psa3g4398 3 413896025 413900609 ECH