Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4355 ATGGCTTCAATTACTCTTTCTCCAAATGCTGCCCCTGTTGCTTTGCCTCCATCATCTAGTGCTGTTGTTTTGTCACCACCTCCATCACCGTTACCTGGTTCTTCTCAGTCGAATCAAACATCGAATTCTCCTCCTCCTTCTGACCCTTCAGCTCTTCCTCCTTCTCCTCCACAGACTGTGCCTGTGACTCCTCCTCCTTCGCCACCTGTTTCTCCTCCTCCTTCGCCACCCAAAAAGAAAAAGGGAAAAGGATCCAGATCTGATTATGCTGCGCCTTCTCCATTTACCTCATCTCACAATTCAGGTACCTTGTTCTTGAAGCCATACCCTCCAGCCAATTTGAATGGGAGTGGCAATGGTAGTGAATTTGTGTATTCACCACCGGAGCCAAGTGGAGTAAATAATTCAAGATCATGGTTAACATATGAAGAACTAATCCAAGCTACAAATGGGTTTTCAGAGCAGAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGTGGTGGACAAGGGGAACGTGAGTTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTCGTCTACGACTATGTTCCCAACGATACTCTTCATTATCATCTACATGATGAAAAAGCACCCATTTTGAATTGGTCTATCAGAGTTAAGGTTGCTGCTGGCGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGTCATCCACGCATTATTCATCGAGATATAAAGTCATCAAACATCCTTCTCGATCACAACTTTGAAGCTCTAGTTTCAGATTTCGGGCTTGCGAAATTAGCATTGGATTCAAACACACATGTAACTACACGTGTAATGGGAACATTTGGGTATATGGCACCAGAATATGCGACGAGTGGAAAATTGACTGATAAGTCCGATGTATATTCCTTTGGTGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCGTCTCAGCCAATCGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTATTGATTGAAGCACTTGATACCGAGGACTTTGAAACTTTGGTGGATCCAAGACTTGAAAAGAACTACAACAGAAACGAAATGTTTAGAATGATTGAGGCTGCTGCAGCCTGCGTGCGTCACTCCTCAGTTAAGAGGCCACGGATGAGTCAGGTTATGAGAGCTTTTGATTCCATGGCCGAGTTTTCGGATCTGAATAACGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCCGCACAACAATCTGCACAGATCAAAATGTTTAGGAGGATGGCTTTCGGAAGCCAAGATAGTTCCAGTTTCTTCAATGATTCTCAAAGTAGCTATGGAAGTAGGAATCAAGACTCTACAACTATGCTCCCTCAAAATAAATCTCGGCCTTGGAACGTTCGAGACGACTCTTTATAG 1515 0.4396 MASITLSPNAAPVALPPSSSAVVLSPPPSPLPGSSQSNQTSNSPPPSDPSALPPSPPQTVPVTPPPSPPVSPPPSPPKKKKGKGSRSDYAAPSPFTSSHNSGTLFLKPYPPANLNGSGNGSEFVYSPPEPSGVNNSRSWLTYEELIQATNGFSEQNLLGEGGFGCVYKGLLDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHDEKAPILNWSIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLIEALDTEDFETLVDPRLEKNYNRNEMFRMIEAAAACVRHSSVKRPRMSQVMRAFDSMAEFSDLNNGMKPGQSSVFDSAQQSAQIKMFRRMAFGSQDSSSFFNDSQSSYGSRNQDSTTMLPQNKSRPWNVRDDSL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4355 504 Pfam Protein tyrosine and serine/threonine kinase 155 422 IPR001245 GO:0004672|GO:0006468
Psa3g4355 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Psa3g4355 504 Gene3D Transferase(Phosphotransferase) domain 1 227 444 - -
Psa3g4355 504 Gene3D Phosphorylase Kinase; domain 1 128 226 - -
Psa3g4355 504 SUPERFAMILY Protein kinase-like (PK-like) 129 422 IPR011009 -
Psa3g4355 504 MobiDBLite consensus disorder prediction 472 498 - -
Psa3g4355 504 MobiDBLite consensus disorder prediction 46 78 - -
Psa3g4355 504 ProSitePatterns Protein kinases ATP-binding region signature. 158 179 IPR017441 GO:0005524
Psa3g4355 504 SMART serkin_6 152 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g4355 504 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 78 475 - -
Psa3g4355 504 MobiDBLite consensus disorder prediction 472 504 - -
Psa3g4355 504 CDD STKc_IRAK 158 422 - -
Psa3g4355 504 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 78 475 - -
Psa3g4355 504 MobiDBLite consensus disorder prediction 1 96 - -
Psa3g4355 504 ProSiteProfiles Protein kinase domain profile. 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4355 Psa-Chr3 408580390 408584771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4355 78 483 Trihelix Transcription Factor Family AT5G38560 69.398 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Psa3g4355 PK_Tyr_Ser-Thr 6.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4355 - - gmx:100790988 729.939