Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4349 ATGGAACTGGAAGGGGAAAGTTCTTTACCCGACAACAAAAGTTGTGATTTTTGTGATGGAAATGAGAAGATTAAGAATGTTGCTTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTAGAGCAATTGTACATGGTTGTTCATTGCCACTTTTTCTTCGGTTCTTTGTTGATCTTGTTAACTCTTTTGGTTCTAATGATGATTATTTGGACAAGATGACCCAAGAAGTTGTTAAGTATGCGTTTTACTTTCTGATTGTTGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGATGGTTGGTTTTAGTGTTGTTTGGCAATTAGCATTGGTTACACTTGCTGTTGTTCCTATGATAGCTGTAATAGGAGGCATTCATACTACCACTTTGGCTAAGTTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGATGGCAACATTGTGGAACAGACTGTTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAATCACTACAAGGCTATTCATCTACTCTGAAGGTTGCTCAAAAGATTGGTTATCGGACTGGACTTGCAAAGGGAATTGGATTAGGTGCTACATACTTTGTTGTTTTCTGTTGTTATGCACTTTTGTTATGGTATAGAAGTTATTTGGTTAGGCATCACTACACCAACGGAGGACTTGCAATTGCTACAATGTTTGCTGTTATGATCGGTGGATTGGCTTTAGGCCAATCTGCACCAAGCATGGCCGCATTTACAAAGGCCAGAGTTGTTGCTGCGAAAATTTTCCATGTGATTGATCACAAGCCTTGTATAGACAAAAATAGTGACTCGGACAAAAATAGTGACTCGGGTTTGGAGTTAGAGACTGTGACGGGACTAGTGGAGCTTAAAAATGTGAACTTTTCATATCCATCAAGACCTGAAGTTCAAATCCTTCACAATGTCTCCTTGAATGTTCCTTCTGGAAAGACCATAACTTTGGTTGGAAGCAGTGGCTCTGGAAAAAGCATAGTTGTGTCCCTAATTGAGAGATTCTATGACCCTTCTTCTAGACAAGTTTTGATAGACAAACATGATGTTAAGACATTGAAGCTTAAATGGTTGAGACAACAAATAGGACTTGTGAGTAAGGAGCCTGCTTTATTTGCCACCACAATTAAAGAAAATATACTATTGGGCAGGCCTGGTGTAGATCAGGTTGAGATAGAAGAAGCTTCTAGAGTAGCTAATGCTCATTCATTCATCTTCAAACTTCCTCAAGGTTATGAAACACAAGTTGGGGAGAGAGGGTTGCAACTATCAGGGGGACAAAAGCCGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCAACAGTTCTTCTTCTAGACAGGCCACGAGTGCATTGGACTCTGAGTCAGAAAAGCTTGTTCAAGAAGCTCTTGATAGGTTCATGA 1485 0.4007 MELEGESSLPDNKSCDFCDGNEKIKNVASVGFGELFRFADGLDYILMTVGTLRAIVHGCSLPLFLRFFVDLVNSFGSNDDYLDKMTQEVVKYAFYFLIVGAAIWASSWAEISCWMWMVGFSVVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQDGNIVEQTVVQIRVVLAYVGETKSLQGYSSTLKVAQKIGYRTGLAKGIGLGATYFVVFCCYALLLWYRSYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMAAFTKARVVAAKIFHVIDHKPCIDKNSDSDKNSDSGLELETVTGLVELKNVNFSYPSRPEVQILHNVSLNVPSGKTITLVGSSGSGKSIVVSLIERFYDPSSRQVLIDKHDVKTLKLKWLRQQIGLVSKEPALFATTIKENILLGRPGVDQVEIEEASRVANAHSFIFKLPQGYETQVGERGLQLSGGQKPRIAIARAMLKNPTVLLLDRPRVHWTLSQKSLFKKLLIGS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4349 494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 118 269 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g4349 494 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 277 - -
Psa3g4349 494 Gene3D ABC transporter type 1, transmembrane domain 119 283 IPR036640 GO:0005524|GO:0016021
Psa3g4349 494 Pfam ABC transporter 328 475 IPR003439 GO:0005524
Psa3g4349 494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 310 492 IPR003439 GO:0005524
Psa3g4349 494 Pfam ABC transporter transmembrane region 118 253 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g4349 494 Gene3D ABC transporter type 1, transmembrane domain 26 118 IPR036640 GO:0005524|GO:0016021
Psa3g4349 494 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 117 474 IPR039421 -
Psa3g4349 494 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 47 116 IPR039421 -
Psa3g4349 494 Gene3D - 301 492 IPR027417 -
Psa3g4349 494 SUPERFAMILY ABC transporter transmembrane region 35 288 IPR036640 GO:0005524|GO:0016021
Psa3g4349 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 476 IPR027417 -
Psa3g4349 494 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 117 474 - -
Psa3g4349 494 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 47 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4349 Psa-Chr3 408143488 408145249 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4349 116 473 Calmodulin-binding Proteins AT2G36910 80.168 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4349 K05658 - gmx:100814667 576.63