Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4347 ATGTCACAAGCTTCTGAGCAATGGAAATGGTCTGAAATGCAAGACATTGAGTTGCTTTCATATTCTCCTACAATAACTCCAACAACAGCATTGGAGTTAGAAAGAGGAGAATCCAAGGAACAAATGGAACTAGAAGGGGAAAGTTCTTTACCCGACAACAAAAGTTGTGATTTTTCTGATGGAAATGAGAAGATTAAGAATGTTTCTTCTATTGGGTTGGTTGAGCTTTTCAGATTTGTTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTAGAGAAATTGTACATGGTTGTTCATTGCCACTTTTTGTTCGGTTCTTTGCTGATCTTGTTAACTCATTTGGTTCTAATGCTGATGATTTAGACAAGATAACCCAAGAAGTTGTTAAGTATGCGTTTTACTTTCTGATTGTTGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACGGGTGAGAGACAATCAACAAGGATGAGGATTAAGTATCTTGAAGTTACTTTGGATCAAGATATTCAGTTCTTCGACACTGAAGTTCGAACTTCCGATGTTGTTTTTTCCATCAACGCCGATGCTGTTATGGTACAAGATGTTATAATTGGTTTTAGTGCTGTTTGGCAATTAGCATTGGTTACACTTGTTGTTGTTCCTATGATAACTGTAATAGGAGGCATTCATACTACCACTTTGGCTAAGTTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGATGGCAACATTGTGGAACAGACTGTTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAAGCACTACAAGTCTATTCATCTACTCTGAAAGTTGCTCAAAAGATTGGTTACCGGACAGGACTTGCAAAGGGAATTGGATTAGGTGCTACATACTTTGTTGTTTTCTACTGTTATGCACTTTTGTTATGGTATGGAGGTTATTTGGTTAGGCATCACTACACCAATGGAGGACTTGCAATTGCTACAATGTTACCTGTTATGATCGGTGGATTGGCTTTAGGCCAGTCTGCACTAAGCATGGCCACATTTACAAAGGCCAGAGTTGCTGCAGTGAAAATTTTCCATGTGATTGATCACAAGCCTTGTATACAAAAAAATAGTGACTCGGGTTTGGAGTTAGAGACTGTGACGGGACTAGTGAAGCTTAAAAATGTGAAATTTTCATATCCATCAAGACCTGAAGTTCAAATCCTTCACAATCTCTCCTTGAATGTTCCTTCTGGAAAGACCATAGCTTTGGTTGGAAGCAGTGGCTCTGGAAAAAGCACAGTTGTGTCCCTAATTGAGAGATTCTATGACCGTTCTTCTGGACAAGTTTTGATAGACGAACATGATGTTAAGACATTGAAGCTTAAATGGTTGAGACAACAAATAGGACTTGTGAACCAAGAGCCTACTTTATTTGCCACCACAATTAAAGAAAATAAACTATTGGGCAGGCCTGGTGCAGATCAGGTTGAGATAGAAGAAGCTGCTAGAGTAGATAATGCTCATTCATTCATATTCAAACTTCCTCAAGGTTATGAAACACAGGTTGGGGAGAGAGGGTTGCAACTATTAGGGGGACAAAAGCAGAGAATAACAATTGCGAGGGCAATGCTGAAAAACCCGACAATTCTTCTTCTAGACGAGGCCACGAGTGCATTGGACTCCGAGTCAGAAAAGTTAGTTCAAGAAGTTCTTGATAGGTTCATGATTGGTAGAACAACTCTTGTAATCGCGCATCGACTATCTACTATTCGCAAATCGGACCTTGTCGATGTACTTCAGCAAGGAAGTGTTTCTGAAATCGGAACTCACAACGAGCTCTTTGCTAAAGGGGAAATGGAGTTTATGCCAAGCTTATCAGAATGCAGGAGACGGCAAATGAAAGTTCAACAAGAAATGCCAGAAAAAGAAGTGCAAGGCCTTCAAGTGCTAGGAATTCTAGTTTGTATTGCAGTGGCGGCTTCCCCCTGTTCTCGTTGTTGTCTTCCCGGTTGTTGTCGCAGCCACTGTCTTACAAAAAATGTTCATGTCGGGTTTCTCTGGTGA 2073 0.4033 MSQASEQWKWSEMQDIELLSYSPTITPTTALELERGESKEQMELEGESSLPDNKSCDFSDGNEKIKNVSSIGLVELFRFVDGLDYILMTVGTLREIVHGCSLPLFVRFFADLVNSFGSNADDLDKITQEVVKYAFYFLIVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEVTLDQDIQFFDTEVRTSDVVFSINADAVMVQDVIIGFSAVWQLALVTLVVVPMITVIGGIHTTTLAKLSGKSQEALSQDGNIVEQTVVQIRVVLAYVGETKALQVYSSTLKVAQKIGYRTGLAKGIGLGATYFVVFYCYALLLWYGGYLVRHHYTNGGLAIATMLPVMIGGLALGQSALSMATFTKARVAAVKIFHVIDHKPCIQKNSDSGLELETVTGLVKLKNVKFSYPSRPEVQILHNLSLNVPSGKTIALVGSSGSGKSTVVSLIERFYDRSSGQVLIDEHDVKTLKLKWLRQQIGLVNQEPTLFATTIKENKLLGRPGADQVEIEEAARVDNAHSFIFKLPQGYETQVGERGLQLLGGQKQRITIARAMLKNPTILLLDEATSALDSESEKLVQEVLDRFMIGRTTLVIAHRLSTIRKSDLVDVLQQGSVSEIGTHNELFAKGEMEFMPSLSECRRRQMKVQQEMPEKEVQGLQVLGILVCIAVAASPCSRCCLPGCCRSHCLTKNVHVGFLW* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4347 690 CDD ABC_MTABC3_MDL1_MDL2 393 621 - -
Psa3g4347 690 Pfam ABC transporter 411 560 IPR003439 GO:0005524
Psa3g4347 690 CDD ABC_6TM_Pgp_ABCB1_D1_like 88 366 - -
Psa3g4347 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 393 629 IPR003439 GO:0005524
Psa3g4347 690 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 358 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g4347 690 SUPERFAMILY ABC transporter transmembrane region 76 374 IPR036640 GO:0005524|GO:0016021
Psa3g4347 690 SMART AAA_5 420 606 IPR003593 -
Psa3g4347 690 Gene3D - 383 630 IPR027417 -
Psa3g4347 690 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 88 624 - -
Psa3g4347 690 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 88 624 IPR039421 -
Psa3g4347 690 Pfam ABC transporter transmembrane region 205 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g4347 690 Gene3D ABC transporter type 1, transmembrane domain 75 670 IPR036640 GO:0005524|GO:0016021
Psa3g4347 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 621 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4347 Psa-Chr3 408111480 408113602 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4347 64 621 Calmodulin-binding Proteins AT2G36910 77.123 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4347 K05658 - gmx:100777382 934.48