Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4345 ATGTTTCCTTCAACTTATTGCTCTTTAGGTCCTTACCCTAGTTATAATCCTAATCCTAATTCATCTTCATCTTCTTCTTCACATTCATACCCTCCTTTTACTTACCTTACCCCTGATCAAAATGCTTCTTCAAACAACAATACCAACAACATCAACACTTTTCTTCATGATCCAACTATTTCTGTTCCATACACACAAACTTCACACCATCATCATGTTCCAATTAATCCTGAAACCCTAACAAATTGGGCGGTTGCTGATTATGCTGCAATGTTGAAACAAGATCTAAGTGGTTCTTCTTCCCATTACAACTTCTCGAATTTGCTTGCGAAGAAGCCGGCGAAGAAACCGGCGAAGAAAGACCGGCACAGCAAGATTCATACATCTCAAGGCTTGAGAGACCGGAGGGTGAGACTCTCGATCGAGATAGCGCGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCTAGCAACACACTTGAGTGGCTTTTCAACAAATCAAAAGAAGCAATTGAAGAGTTAACTAGAAGCAAGAACAATTTAGCTTCGGGTGACGACGATGTAGATGATCATAGCTTCTCCACTTCGTCTTCCGAAGGAGAAGACGAAGCCCGAAAGATGAAAAGAGCACAGAAGGAATCCTCAAAGATGAAAGACTCAAGAGAAAAAGCAAGAGCAAGAGCAAGAGAAAGAACTAGTGAAATGAAGATTCAAGATTTGAAGGAAAAGTACCCAGAAACCGATCATAATCAACAAATTCTCCATCAATTGATGCCGAACGACGAAGAAAACTCGAAACTAGCTCAAAGAGATGATATCTTTAACTTTATTGAAGAATCAATTGTGATCAAGAGAAAGTTAAAGAAATCTTCTTCACAACATCATCAACAAAACATTAGTTTTGATCACAATGACTCTCCAATGATAACACCAAATTGGGATACAAATAATAATAACAATGCTGCCGCAACCGGAAGATCCAACTTTTCTGCAATATCAAGAATGAATCTATCATCAGGGCTTCAAATCTTTGGAAAATCATGGGAGGAATGCAATAACAGTCCAAATAGATATTAG 1086 0.3858 MFPSTYCSLGPYPSYNPNPNSSSSSSSHSYPPFTYLTPDQNASSNNNTNNINTFLHDPTISVPYTQTSHHHHVPINPETLTNWAVADYAAMLKQDLSGSSSHYNFSNLLAKKPAKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNLASGDDDVDDHSFSTSSSEGEDEARKMKRAQKESSKMKDSREKARARARERTSEMKIQDLKEKYPETDHNQQILHQLMPNDEENSKLAQRDDIFNFIEESIVIKRKLKKSSSQHHQQNISFDHNDSPMITPNWDTNNNNNAAATGRSNFSAISRMNLSSGLQIFGKSWEECNNSPNRY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4345 361 Coils Coil 210 246 - -
Psa3g4345 361 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
Psa3g4345 361 Pfam TCP family transcription factor 118 239 IPR017887 -
Psa3g4345 361 MobiDBLite consensus disorder prediction 112 131 - -
Psa3g4345 361 ProSiteProfiles R domain profile. 221 238 IPR017888 -
Psa3g4345 361 MobiDBLite consensus disorder prediction 185 236 - -
Psa3g4345 361 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 27 210 - -
Psa3g4345 361 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 210 360 - -
Psa3g4345 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 210 IPR005333 GO:0003700
Psa3g4345 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 210 360 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4345 Psa-Chr3 408066752 408068730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4345 56 242 TCP Transcription Factor Family AT1G67260 41.284 1.59e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa3g4345 TCP 3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4345 - - cam:101489716 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4345 3 408066752 408068730 Psa4g1016 4 75715015 75717959 ECH
Psa3g4345 3 408066752 408068730 Psa3g4345 3 408066752 408068730 ECH
Psa1g1415 1 96398759 96401196 Psa3g4345 3 408066752 408068730 ECH