Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4334 ATGGGAAAGAAAAAGACAGATGATGCAGGTGCATCTACAAAGGCTAAAGCAAGTAGTAAAGATGTTTCTAAGAAGGAAAAAATGTCCGTCTCTGCTTTGTTGGCAAGTATGGATGAAAAACCCGATAAACCTAAAAAAGCATCTTCTTCCTCGAATAAGCAGAAGGCAAAACCTGCTCCAAAAGCTTCTACATACACTGATGGTATTGATCTTCCTCCCTCCTCTGATGATGAATCCGAAGAGGAGTTAGAGCAAAAGCATAGGCCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAGGAGTTGAAAAAGCGTGAAAAGAAAGATGTTTTAGCTGCCCATCAGGCTGAACAGGCAAGGAAAGAAGCTCTTAGGGATGATCATGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCAGTGCTTGATGGAGATGATGGTGCCGATGCTAATGTTAAAGATATTACGATAGAAAATTTTTCAGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCGGTGAAGATATCTCATGGAAAGCGGTATGGTTTAGTTGGGCCGAATGGAATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCCGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCCGTCGTTTCAGCTAATGCTGAACTTGTTAAAGTTCGACAAGAAGTTGCTGATCTACAGAATGCAGCTTCTGGTGAAGGCGTGGATAAAGATGTTACTAATGAGGATGGGGATGCGGGAGACAAGCTAGCAGAGCTATATGATCAATTACAACTGATGGGGTCTGATGCTGCTGAATCCCAAGCGTCAAAGATTTTAGCCGGGCTGGGTTTTACTAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTCGTACAACCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGAGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCGCACGACAGAGATTTCCTCAATACTGTATGCTCTGAAATTATTCACCTGCATGATTTCAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAAAGTGGGTACGAGCAGCGCCGTAGAGAGGTGAATAAGAAGTACGAGATTTATGACAAGCAATTGAAAGCAGCTAGAAGGACTGGAAACAAGGCTCAACAAGATAAGGTCAAGGATCGAGCTAAGTTTGCAGCTGCCAAGCAAGCATCGAAAAGCAAAAGTAAGGGAAAGGTTGATGAGGATGAGACACAGGTAGAGGCACCACACAAGTGGAGGGACTACAGCGTGGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCTCTTCTGCAGCTTATTGAGGTGAGCTTCAGCTACCCCAACCGAGCGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACCCGAGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTTTAGCCGGTGATTTGGATCCAAGTGAAGGTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTAAGGATAGGGAGATATTCTCAACATTTTGTGGACCTACTGACGATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTCCACCCAGACCAGGAGGGACTCAGTAAGCAGGAGGCTGTCCGGGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTACACCCATTGTCAAACTATCAGGAGGGCAGAAATCTCGAGTTGTTTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCCGATGCCCTTGATGAATTCACAGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCACGTGTTTGTGATGATGAAGAAAAGAGTCAAATATGGGTTGTTGAGGATGGCACTGTCAGAAAATTCCCTGGAACATTTGATGAGTACAAAGAAGATTTGCTGAAGGAGATTAAAGCTGAAGTTGATGACTGA 2154 0.4355 MGKKKTDDAGASTKAKASSKDVSKKEKMSVSALLASMDEKPDKPKKASSSSNKQKAKPAPKASTYTDGIDLPPSSDDESEEELEQKHRPDVKPLEVSIAEKELKKREKKDVLAAHQAEQARKEALRDDHDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANAELVKVRQEVADLQNAASGEGVDKDVTNEDGDAGDKLAELYDQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDFKLHFYRGNFDAFESGYEQRRREVNKKYEIYDKQLKAARRTGNKAQQDKVKDRAKFAAAKQASKSKSKGKVDEDETQVEAPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNRADFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLDPSEGEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEEKSQIWVVEDGTVRKFPGTFDEYKEDLLKEIKAEVDD* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4334 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 416 IPR027417 -
Psa3g4334 717 ProSitePatterns ABC transporters family signature. 313 327 IPR017871 GO:0005524
Psa3g4334 717 Coils Coil 98 118 - -
Psa3g4334 717 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 4 717 - -
Psa3g4334 717 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 409 IPR003439 GO:0005524
Psa3g4334 717 CDD ABCF_EF-3 156 386 - -
Psa3g4334 717 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 488 715 IPR003439 GO:0005524
Psa3g4334 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 701 IPR027417 -
Psa3g4334 717 CDD ABCF_EF-3 488 692 - -
Psa3g4334 717 Gene3D - 153 439 IPR027417 -
Psa3g4334 717 MobiDBLite consensus disorder prediction 423 463 - -
Psa3g4334 717 Coils Coil 405 425 - -
Psa3g4334 717 Coils Coil 232 252 - -
Psa3g4334 717 MobiDBLite consensus disorder prediction 1 90 - -
Psa3g4334 717 SMART AAA_5 180 385 IPR003593 -
Psa3g4334 717 SMART AAA_5 514 692 IPR003593 -
Psa3g4334 717 PANTHER - 4 717 - -
Psa3g4334 717 Pfam ABC transporter 171 341 IPR003439 GO:0005524
Psa3g4334 717 Pfam ABC transporter 505 642 IPR003439 GO:0005524
Psa3g4334 717 Gene3D - 450 716 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4334 Psa-Chr3 406031422 406035524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4334 487 702 Calmodulin-binding Proteins AT2G36910 30.000 6.90e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4334 K06184 - gmx:100806865 1134.01