Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4328 ATGCAATTCGCTAAGCTTGATGATTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAGGGATGCAGAAAATACACGGAAGGACTTGGGGAGGCATATGATGGAGATATTGCATTTGCAAGTGCCCTTGAAACTTTTGGTGGGGGTCATAATGACCCCATCAGTGTAGCTTTTGGAGGCCCTGTTATGACCAAATTTACCATAGCCTTGAGAGAAATTGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTCCAGTTTGTTAATATTGATCTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAAGCCAGCCTTATTTATGACCAGACCCGTGAAAAGTTTCTGTCACTGAGAAAAGGTACAAAAACTGATGTAGCTCATGCCCTAGAAGAGGAGCTTCATAGTGCAAGAGCGACATTTGAGCAAACTCGGTTTAATCTGGTTACTGCCCTGTCAAATGTTGAAGCTAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACAATGGATGCACATCTTCGTTACTTCAAACAAGGGTATGAACTATTGCATCAAATGGAGCCATACATTAACCAGGTTTTGACTTATGCTCAACAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGATTACAAACGGCAGATTGATCGAGAAAGTAGGTGGGCTTCTAATGGTTCTAATGGTTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCGCATAAGATGATAGAAGCAGTAATGCAAAATGCTGCAAAGGGAAAGGTTCAGACTATTCGACAAGGATATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGAATGCTGTATTACTACCGTAAACAAATCAGCAAATCATCGGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCAGAGCTTGGTTCTGGACTTCTAAGTCGATGGCTGTCTTCTCATCATCATCATCATGGTGGAGTACATGACGAGAAATCTGTTGCTCATCACACTGTGAACCTACTTACATCAACTATCAAAGTTGATGCTGACCAATCGGATTTGAGATTTTGCTTCAGGATCATTTCACCGACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATTACAGGTGTTATTGCCTCATTGCTAAGTTCTCAGATTCCTGAAAGGTTATTACCGGCAAGTCCAATGGGAAGTGGGCATCATAGGTCTACAAGTGAGAGCAGTTCTTTTGAAAGTTCAGATTTTGACCACTCTGCTGTTGAAGAAAGTGCAGCTGATAGAAATTTTACATCTTCACATCTGGAGCGTGCCTCCAGAAGTTTGAACCAGCAGCGATCCTGTAATAAAAGTGAGAAACCAATTGATGTGTTGCGAAGAGTTATGGGGAATGAAAAGTGTGCTGATTGTGGGGCTCCTGAACCTGACTGGGCATCATTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCCAAGGTTCGCTCTCTTACATTGGACGTTAAGGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTAGGGAATGCTTTTGCCAACTCAGTCTGGGAGGAACTTTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCGAGCAAGTCCGATAAGCCACAGACGGTTTTCATCACCAAACCCGGTCAATATGATTCTCTATCGGTGAAGGAAAAGTTCATCCATGCAAAGTATGCGGAGAAGATTTTTGTTCGCAGACCGAAGGACAATCAATACCAGCTTCTAGTGGCACAACAGATCTGGGAAGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTTAATTCCGACGTTGATGTCAATGTTGTTTATGAGCAAGCATGCAACAACTCTTTAACCCTTGCCAAAGTCATGCTATTACAAGAGCAGGCAAACCATGATCAGGGCTCTAATTTAGCAGGGAACACATTGGACTGGTCCTCTAATTGCTCTTTGAATTTGGTAGGCACTAAAGAAGGCCAGACAATGGACAATATCGAAGGTTGCACACTACTTCACATTGCTTGTGAAACCGCGGACATTGGAATGGTGGAGCTTCTCCTGCAATATGGTGCAAATATTAATGCGAGCGATTTGAGAGGCCGAACTCCTTTACATCGCTGTATTCTCAAAGGAAGATCTATAATTGCAAGATTACTTCTTTCAAGGGGTGGCGATCCTCGAGCTGTGGACGAGGAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGACGAAAGACAAGTCCATGCACCATCAACTGATTCAAATGGATGA 2499 0.429 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKTDVAHALEEELHSARATFEQTRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQISKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHHRSTSESSSFESSDFDHSAVEESAADRNFTSSHLERASRSLNQQRSCNKSEKPIDVLRRVMGNEKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQVDLVPTGSSKSDKPQTVFITKPGQYDSLSVKEKFIHAKYAEKIFVRRPKDNQYQLLVAQQIWEAVRANDKKAVYRYIVNSDVDVNVVYEQACNNSLTLAKVMLLQEQANHDQGSNLAGNTLDWSSNCSLNLVGTKEGQTMDNIEGCTLLHIACETADIGMVELLLQYGANINASDLRGRTPLHRCILKGRSIIARLLLSRGGDPRAVDEEGRTPIELAAESNADERQVHAPSTDSNG* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4328 832 Gene3D - 285 439 IPR011993 -
Psa3g4328 832 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Psa3g4328 832 Gene3D Arf GTPase activating protein 482 646 IPR038508 -
Psa3g4328 832 SUPERFAMILY PH domain-like 293 445 - -
Psa3g4328 832 MobiDBLite consensus disorder prediction 449 465 - -
Psa3g4328 832 ProSiteProfiles PH domain profile. 292 430 IPR001849 -
Psa3g4328 832 SUPERFAMILY Ankyrin repeat 666 818 IPR036770 -
Psa3g4328 832 Pfam PH domain 294 429 IPR001849 -
Psa3g4328 832 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Psa3g4328 832 SMART ANK_2a 772 801 IPR002110 GO:0005515
Psa3g4328 832 SMART ANK_2a 739 768 IPR002110 GO:0005515
Psa3g4328 832 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Psa3g4328 832 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Psa3g4328 832 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Psa3g4328 832 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Psa3g4328 832 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Psa3g4328 832 MobiDBLite consensus disorder prediction 798 832 - -
Psa3g4328 832 SUPERFAMILY ArfGap/RecO-like zinc finger 502 642 IPR037278 -
Psa3g4328 832 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 825 - -
Psa3g4328 832 ProSiteProfiles Ankyrin repeat region circular profile. 772 804 - -
Psa3g4328 832 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 647 IPR001164 GO:0005096
Psa3g4328 832 SMART arf_gap_3 502 647 IPR001164 GO:0005096
Psa3g4328 832 ProSiteProfiles Ankyrin repeat region circular profile. 739 770 - -
Psa3g4328 832 Coils Coil 227 247 - -
Psa3g4328 832 Pfam Putative GTPase activating protein for Arf 505 641 IPR001164 GO:0005096
Psa3g4328 832 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Psa3g4328 832 CDD ArfGap 505 634 - -
Psa3g4328 832 Pfam BAR domain of APPL family 6 232 - -
Psa3g4328 832 MobiDBLite consensus disorder prediction 444 468 - -
Psa3g4328 832 SMART PH_update 293 432 IPR001849 -
Psa3g4328 832 CDD BAR_SFC_plant 14 215 IPR035670 -
Psa3g4328 832 Pfam Ankyrin repeats (many copies) 742 793 IPR002110 GO:0005515
Psa3g4328 832 CDD PH_ACAP 295 434 - -
Psa3g4328 832 PANTHER CENTAURIN/ARF 1 825 IPR045258 GO:0005096
Psa3g4328 832 Gene3D - 647 821 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4328 Psa-Chr3 405834136 405842568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4328 514 641 C2H2 Transcription Factor Family AT4G21160 44.186 1.12e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4328 K12489 - gmx:100789134 1429.46