Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4325 ATGGTTTCTGGTCTCTCTCAAGTCATTGGAACTTCTAATAATAATATTAATCCACACATGGCACAACCAACTTCAAGTACTATTCTCAATAAAGAATCTCAACCTCTTGTAGATCAAGAAGCAAAAAAGAAACCTCACTATAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCAATAAAAGCAGCTAGGGTTTGGCTAGGAACATTTGATACAGCTGAAGATGCAGCTCTTGCATATGACAAAGCAGCACTTAAATTCAAAGGAACAAAAGCTAAACTTAATTTCCCCGAAAGAGTTGTTCAATGCAACAACAACAACAACAATAATTCTAGTAGTGGTTCTGTTGTTGATCAACAAGTTTTTCCGAATCTGTTTCAGTATGCTCAGATTCTCTCTAGTGATGCTGAGTTTCCTTATTATGCATCTCATCTTTTCAATCAAGATCAACAACAAGGAGATGGTGTTCATCATCCACCTGGTCAGTAG 507 0.3787 MVSGLSQVIGTSNNNINPHMAQPTSSTILNKESQPLVDQEAKKKPHYRGVRQRPWGKWAAEIRDPIKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCNNNNNNNSSSGSVVDQQVFPNLFQYAQILSSDAEFPYYASHLFNQDQQQGDGVHHPPGQ* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4325 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 21 147 - -
Psa3g4325 168 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Psa3g4325 168 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Psa3g4325 168 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Psa3g4325 168 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Psa3g4325 168 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Psa3g4325 168 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Psa3g4325 168 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Psa3g4325 168 PANTHER DNA-BINDING DOMAIN 21 147 IPR044808 GO:0003700|GO:0009873
Psa3g4325 168 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4325 Psa-Chr3 405625569 405628285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4325 1 152 AP2-EREBP Transcription Factor Family AT5G13330 50.000 1.13e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g4325 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4325 - - mtr:MTR_7g020980 244.202