Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4321 ATGGCATTCCCTCCGGATGAAAACGGCGGAGGAGTCGCCACCGAAGAAGATACCACCATTGACATCCACACCACCCACGGAACCCCCATTCGTTACCTCCCTCTCGATCATCTCTACTCCTCTACATCCCCTTGCAGTGGCTCCTCCAACGTCATGTCCAAAAAAGTTAAAGCTCGTAAACTCAACCTAACCGCAAACACAACCACAACCAACAACAACAGCGACGACGATAATAACATTCACTTCAATGGCGAAATCGATTATCCGATTGATGATAAGAAAACCACGTCCACGTCTATGGTGGTTTATGCTAAACCTAAACCACCTCTTCTGTATGTTTACTCTCGTAGGCGAAAGAGGAGTTCGATTCCGGTGTCGTTTCGCGATTCGTTGTTGCTGAGGCGGGATGAGATGGATTCTGAGAGGACTGTGTTGAAGAGGAGGAAAATTGGGAGTACTGAATTGGAGAGATTAGGGGTTGATTGGAATGCATTGGGGAAACTTCATGGACCGAGATTGAGGGAATGTCGTAATCCAATTGGGAGTTTTGGTATTGACGGGAGTAATAATAATAATAAGTGTAGTTCTGTTGCTAAGCTTCCCAAGTTGACGCCCGAGTCATACTCATTGAAGAGATGGGTCACGTTGAGTTTTGATGGTGCCGATCCCAAGGCTTTTGTTGGATTAAAATGCAAGGTTTACTGGCCCATGGATTCGAAATCATACACTGGTCATGTCAAGAGTTATGACAGGGAAGCTAACATACATCATATCGAGTATGATGATGGAGATGAGGAAAATTTAACTCTTTCAAATGAAAATATAAAATACCATGTTTCTCGAAAAGACATGGAACGCTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGCATGGATGATTGCCAAGACTTTGAGCCAGGGGATATCATATGGGCCAAGCTTACAGGTTATGCAATGTGGCCTGCTGTTGTCTTGGATGAATCACTTGCTAGCAGCTGTAAGGGTTTAAAAACGTTCATAGGGGGGAGATCGGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGAGTTCGACTGCAACAGGTGAAATCATTTCTCAATGGACTTCTAACAGATTTACACTCAAAGTGCAAGAAACAGAGTTTCATTGATGGTTTAGAAGAGGCAAAAAGGTATTTAAGTGCACAGAAGCTTCCTTTGGAGATGATAGAACTGCGGAAAAGATGTACAGCTGATAACCATAACAATATAAGGGGAGAGGATGGAGGATGTACAGATTCTGGTGAAGACTGTGTAAATGGCAGAGGGACTTGGGCAGCTCTTCAAAACATTGATACTTTTCCTTATGAAGTGGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGGAGATTCCACTGCTTTTAGGGATGGAAAATCCATCTGGCCCGAAGGATACATAGCAGTGCGGAAATTCACATCAGTTGCTGACCCTAAAGTATCTGTCCCTTATAAGATGGAGGTTTTGAGAGATCCAGAATCAAGAGTCAGACCATTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCATCTACTTGCTGGAATCAAATATACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAAGTTCCGCTGCTGATGTTGAGGTAGAAAGTGGCTACAAATCCGGCTCTGATATGTTTGGTTTTTCCAATTCTAAAGTGGCTAAACTTATTAAGGGATTATCTAAGTCCAAAGTCTCTTTGAAGAAATCAATTTGCAAGTCAGGTTCCGGATTGCCTCTTGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGACGAGGAGTACGAGACCAATCTGTTTCTGCAGTGTGACAAATGCCGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTAAATGGAGTGCTATGGTTATGCAAATTATGTCGTTCGGGTGCTCCTCCCCCACCATGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCGATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGTTGGAAATTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCGTATCATCCACTCTGTGCCCGTGCAGCTGGTCTTTGCGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTCTCCCTAGATGATGATGAGGATCAGTGCATTCGCTTACTTTCTTTTTGCAAGAGACATAGGCAGCCATCTCATGAACATTCTGTAGCCGATGAACGCGTTCAGGTTATTGGTCAATGTTCAGATTATAAACCACCACCCAATTCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTCTGGTCGGAGAGGCCGAAAAGAACCTGAAGTACTTGCAGCTTCTTCGCTGAAACGTTTGTTTGTGGAGAATCAACCATATTTAGTTGGTGGATACTGCCAACATGGATTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTTTGCTCTAAATTCTTTTGTAGCGAGCAAAGGCTAAGAACGTCGGTGGTTGATTCTGCAGACAACATACTTAGTGTTCCTGAGAAATATAAGTACATGAAGGAAACCTGCCGAAAGCAGTTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATATACCGGTGAACTTGTTAGACCTTCTATTGCTGATCGAAGAGAGCGTTTTATATACAATTCTTTAGTGGGTGCTGGAACATATTTGTTTCGGGTTGATGATGCAAGAGTCATTGATGCCACCAGAGCAGGAAGCATCGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGTGACGAGCATATTATAATATTTGCAAAGAGGGACATTAACCAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATAGATGAGCGGCTTGCTTGTTACTGTGGCTTCCCGAAGTGCCGAGGTGTAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACCATATATGCACCGCGAAGTGAATTAGTAGATTGGAAAGGAGAATGA 3297 0.4298 MAFPPDENGGGVATEEDTTIDIHTTHGTPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNLTANTTTTNNNSDDDNNIHFNGEIDYPIDDKKTTSTSMVVYAKPKPPLLYVYSRRRKRSSIPVSFRDSLLLRRDEMDSERTVLKRRKIGSTELERLGVDWNALGKLHGPRLRECRNPIGSFGIDGSNNNNKCSSVAKLPKLTPESYSLKRWVTLSFDGADPKAFVGLKCKVYWPMDSKSYTGHVKSYDREANIHHIEYDDGDEENLTLSNENIKYHVSRKDMERLKLSYAKVRDSNVSDYDVEEMLALAASMDDCQDFEPGDIIWAKLTGYAMWPAVVLDESLASSCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLNGLLTDLHSKCKKQSFIDGLEEAKRYLSAQKLPLEMIELRKRCTADNHNNIRGEDGGCTDSGEDCVNGRGTWAALQNIDTFPYEVGDLQILSLGKIVGDSTAFRDGKSIWPEGYIAVRKFTSVADPKVSVPYKMEVLRDPESRVRPLFRVTVDGGEQFNGYTPSTCWNQIYERIKKLEKVVSESSAADVEVESGYKSGSDMFGFSNSKVAKLIKGLSKSKVSLKKSICKSGSGLPLGYRQVHINWFDLDKCNVCHMDEEYETNLFLQCDKCRMMVHARCYGELEPVNGVLWLCKLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSLDDDEDQCIRLLSFCKRHRQPSHEHSVADERVQVIGQCSDYKPPPNSSGCARSEPYDYSGRRGRKEPEVLAASSLKRLFVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRTSVVDSADNILSVPEKYKYMKETCRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYLFRVDDARVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDINQWEELTYDYRFFSIDERLACYCGFPKCRGVVNDTEAEERAATIYAPRSELVDWKGE* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4321 1098 Pfam F/Y-rich N-terminus 469 519 IPR003888 GO:0005634
Psa3g4321 1098 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 12 1095 - -
Psa3g4321 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 682 IPR013083 -
Psa3g4321 1098 PANTHER PHD FINGER PROTEINS 12 1095 - -
Psa3g4321 1098 Gene3D SET domain 896 1087 IPR046341 -
Psa3g4321 1098 SUPERFAMILY Tudor/PWWP/MBT 316 416 - -
Psa3g4321 1098 SMART PostSET_3 1058 1074 IPR003616 -
Psa3g4321 1098 ProSitePatterns Zinc finger PHD-type signature. 634 679 IPR019786 -
Psa3g4321 1098 Pfam PHD-zinc-finger like domain 687 808 - -
Psa3g4321 1098 Pfam F/Y rich C-terminus 528 601 IPR003889 GO:0005634
Psa3g4321 1098 SMART fyrn_3 478 522 IPR003888 GO:0005634
Psa3g4321 1098 CDD SET_SETD1-like 921 1070 - -
Psa3g4321 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 811 IPR013083 -
Psa3g4321 1098 ProSiteProfiles Extended PHD (ePHD) domain profile. 685 809 IPR034732 -
Psa3g4321 1098 ProSiteProfiles Zinc finger PHD-type profile. 631 682 IPR019787 -
Psa3g4321 1098 ProSiteProfiles Post-SET domain profile. 1058 1074 IPR003616 -
Psa3g4321 1098 SUPERFAMILY SET domain 932 1071 IPR046341 -
Psa3g4321 1098 CDD ePHD_ATX1_2_like 694 808 IPR041956 -
Psa3g4321 1098 SUPERFAMILY FYVE/PHD zinc finger 625 695 IPR011011 -
Psa3g4321 1098 Pfam PHD-finger 645 680 - -
Psa3g4321 1098 CDD PHD_ATX1_2_like 633 679 IPR042010 -
Psa3g4321 1098 SMART PWWP_4 320 383 IPR000313 -
Psa3g4321 1098 ProSiteProfiles FYR domain FYRC motif profile. 526 612 IPR003889 GO:0005634
Psa3g4321 1098 Gene3D - 464 604 - -
Psa3g4321 1098 ProSiteProfiles FYR domain FYRN motif profile. 463 522 IPR003888 GO:0005634
Psa3g4321 1098 SMART fyrc_3 530 614 IPR003889 GO:0005634
Psa3g4321 1098 Pfam PWWP domain 323 410 IPR000313 -
Psa3g4321 1098 Gene3D - 310 419 - -
Psa3g4321 1098 ProSiteProfiles SET domain profile. 934 1052 IPR001214 GO:0005515
Psa3g4321 1098 ProSiteProfiles PWWP domain profile. 322 385 IPR000313 -
Psa3g4321 1098 SMART set_7 934 1058 IPR001214 GO:0005515
Psa3g4321 1098 Gene3D - 222 280 - -
Psa3g4321 1098 Pfam SET domain 945 1051 IPR001214 GO:0005515
Psa3g4321 1098 SMART PHD_3 633 680 IPR001965 -
Psa3g4321 1098 SMART PHD_3 743 809 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4321 Psa-Chr3 405289949 405304257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4321 614 779 C2H2 Transcription Factor Family AT3G14740 38.596 6.15e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g4321 zf-HC5HC2H_2 3.2e-33 CL0390