Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4312 ATGTTTTCTTCTCTACTTTGTTGTTCCATTGCAATGTGTGTTGCAATTTTCCTCCACCTATGTTCCTTTGCGGTTTCACACCCTAACAAGATCAATAATTTACCAGGTCAACCTCATGTTGAGTTTCATCAGTTTTCAGGCTATGTAAATGTGGATAACAAAAACCAAAAAGCACTCTTTTTCTACTTTGTTGAAGCTCAGAATGATGCAGCTTCTAAACCCCTTGTTCTCTGGCTCAATGGAGGACCCGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCAGAAAATGGTCCTTTTAGGCCTAAAGGAGAGGGTTTGGTTAGGAACCAATTCAGCTGGAATACAGAAGCAAATATGTTGTACTTGGAATCACCAATTGGAGTAGGATTTTCTTATTCAACTAATACTTCATCTTATGAAGGTGTAAATGACAAGATTACAGCCATGGATAATCTAATCTTCTTGCAAAACTGGTTTGTGAAGTTTCCGGAATACAGAAACAGAAGTTTGTTCATTGTAGGAGAAAGCTATGCTGGTCATTATGTTCCTCAATTGGCTGAACTTATGCTTCAATTCAACAAAAAGGAGAAGCTGTTCAATTTAAAAGGCATTGCTCTTGGCAATCCTGTACTAGAATATGCGACCGATTTTAATTCAAGAGCTGAGTTCTTTTGGTCTCACGGATTGATCTCAGACTCAACATTCAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAACGGCGCCGTTTCTCCTCTTTGTTCAAGTGTGATGAGTCGAGTTACTACAGAAACAAGTAGATTTGTCGACAAGTATGATGTTACACTCGACGTTTGTATATCTTCTGTTTTTTCACAAACCAAAGTCCTCAATCCCGAGCAAATGACAGAGACAATTGATGTATGCGTGGAAGACGAAACGCTCAACTATCTTAACAGAAAAGATGTTCAATCGGCTTTACGTGCACGTCTGGTCGGGATACAAAGATGGTCTCCTTGTAGCAATGTGTTGGATTACGAGTTGCGCGACTTGGAGATACCGACGATCACTGTTGTAGGCAAGCTAGTCAAGGCAGGAATACCGGTATTGGTCTATAGTGGTGATCAGGATTCGGTTATTCCATTGACTGGTAGCAGAAGTTTGGTAGATCAACTGGCAAAGACACTGAGAATCAATACCACTGTGCCATACAGGGTGTGGTTTGAAAGGCAGCAGGTTGGTGGGTGGACTCAAGTTTACGGTAACATACTATCGTTTGCAACAGTTAGGGGAGCATCACATGAAGCACCCTTTTCACAACCTAAGAGATCACTTGTGTTGTTCAAGTCCTTCTTAGAAGGAAAGCCTCTACCAGAGGAATTTTGA 1383 0.4056 MFSSLLCCSIAMCVAIFLHLCSFAVSHPNKINNLPGQPHVEFHQFSGYVNVDNKNQKALFFYFVEAQNDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEGLVRNQFSWNTEANMLYLESPIGVGFSYSTNTSSYEGVNDKITAMDNLIFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTFKMFTSVCNYSRYVREYYNGAVSPLCSSVMSRVTTETSRFVDKYDVTLDVCISSVFSQTKVLNPEQMTETIDVCVEDETLNYLNRKDVQSALRARLVGIQRWSPCSNVLDYELRDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRSLVDQLAKTLRINTTVPYRVWFERQQVGGWTQVYGNILSFATVRGASHEAPFSQPKRSLVLFKSFLEGKPLPEEF* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4312 460 Gene3D - 355 453 - -
Psa3g4312 460 Gene3D - 308 344 - -
Psa3g4312 460 Pfam Serine carboxypeptidase 36 453 IPR001563 GO:0004185|GO:0006508
Psa3g4312 460 SUPERFAMILY alpha/beta-Hydrolases 32 457 IPR029058 -
Psa3g4312 460 Gene3D alpha/beta hydrolase 26 287 IPR029058 -
Psa3g4312 460 PANTHER CARBOXYPEPTIDASE 7 458 - -
Psa3g4312 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Psa3g4312 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Psa3g4312 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Psa3g4312 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Psa3g4312 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Psa3g4312 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 458 IPR001563 GO:0004185|GO:0006508
Psa3g4312 460 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4312 Psa-Chr3 404461824 404465746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4312 316 456 Calmodulin-binding Proteins AT2G22960 27.660 6.16e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4312 K16297 - gmx:100805130 815.839