Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4311 ATGGTTGCGGCAAAGAAGACCAAGAAGACTCATGAGAGTATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATATACCCTAGGTTACAAAACCGTTCTCAAGTCCCTAAGGAGTTCAAAAGGGAAGTTGATTATCATTGCTAACAACTGTCCTCCTTTGAGGAAATCTGAAATTGAATACTATGCTATGTTGGCTAAAGTTGGAGTTCATCATTACAATGGAAACAATGTTGACTTGGGTACCGCATGTGGAAAGTACTACAGAGTGTGCTGCCTCAGCATTGTTGATCCTGGTGATTCTGACATCATTAAGTCAATTCCCGGTGACCAGTAA 339 0.4189 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKSIPGDQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4311 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
Psa3g4311 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Psa3g4311 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
Psa3g4311 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Psa3g4311 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Psa3g4311 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Psa3g4311 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Psa3g4311 112 Gene3D - 2 108 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4311 Psa-Chr3 404459583 404461792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4311 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 89.286 9.19e-73 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4311 K02908 - ini:109159740 226.098