Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4266 ATGGATCCAAAAGTGTGTGATGAAACAGTGAAAGAAGCTTCAGTTTTCAAGCCTGAGAAGATTCCCCAAGCAGTCGATGAATCGATTGTGTGTCCCACTCCAGAGAAGAAGACTGAACTATTACCCAACAAATTCAAGGATCCACTATCCCATCTTCCAGAAGATTACAGGAACATTGCTGAATTGTTTAGTCATATGAGTTGTTCACTTAGATTGCTGCATCTGCGTAAAAAATCTCCAACTTTTCTGAATATTTGCAACAAGGTTGAAGTTCTTGCTAAAAGAAACTTCTCACATGCTGATCTAGCACAGATGAAGTATATACTCCCTGAAGGGATAGAAATAGAAAAGGTTGTTGTTATTGATAAGAAGAGCTTGTCTGTGAAGCCGGATTTGAAGATCACCTTGATCACCTTGGTTTTCGAAGTTGTAAAAGATCACTCTGAACAGTCTGCAGATATAGCTCTTAGACGACTTTTTAATTCCAGGCTGATTAATTTCTTTAATCTGCACCCTCAGGTTACTAAGATTCCACAGTCCAGACTACCAGAGCCCTTTAGCCAAGAAGCTTGTAATTTGGCTTTCAATGAAGGGCCTGCAGATTTTGCAGCAGAACTTTCATCAACTTCCAATGAAGTTACACCTGCTCTGTCAGCACCTGAGAGATTGGTGCTTGGCTCTGATGTTAAGCCTCAGAAAATGACTGCTCAAAAGTCTATGTCAGGCTTTAAGCCCGCAAAAAGAGCGCTCGACTTTACACTCACAGAAGGCAATGGTGATTTCGATTATAGAGTAGACATGTTAGAATCTAGCAAAGCTATGCCTGAATCTGAGTATTGCAAATCTTTTGATTCTGTTTCCCTGCCTCAAGAGATACAAGAGAATCTTTGTTATTCCTTTGAGAAAATCAACCAAAATCAAATTAGTTTGGATGCATCAGATGACAATCCTCCATCATTAGTGGAACTGGTTAATGTGATTGACTCTATATTTAGCTCTTTGGATGCATCAGATGACAATCCTCCATCATTAGTGGAACTGGTTAATGTGATTGACTCTATATTTAGCTCTGCCAAAACAAATGAAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGGTTAACTGTTCAGATTTTGTTGAGACTACTAGAGAAGTTGAAGAACAGATTGAGATTTTGGAAAAGATTGTGCCAGATTGGATTTGCAAGAAGTTGCTTGCTTCTGTAGATGGAATCACACTGTACTGCGTTAATAATGCGATAGATTTGGACTCGGTTCGATCAAGACTTCTCAGTAATGCAACCAAAGGAGACGAGTGA 1320 0.3932 MDPKVCDETVKEASVFKPEKIPQAVDESIVCPTPEKKTELLPNKFKDPLSHLPEDYRNIAELFSHMSCSLRLLHLRKKSPTFLNICNKVEVLAKRNFSHADLAQMKYILPEGIEIEKVVVIDKKSLSVKPDLKITLITLVFEVVKDHSEQSADIALRRLFNSRLINFFNLHPQVTKIPQSRLPEPFSQEACNLAFNEGPADFAAELSSTSNEVTPALSAPERLVLGSDVKPQKMTAQKSMSGFKPAKRALDFTLTEGNGDFDYRVDMLESSKAMPESEYCKSFDSVSLPQEIQENLCYSFEKINQNQISLDASDDNPPSLVELVNVIDSIFSSLDASDDNPPSLVELVNVIDSIFSSAKTNEITKEELLQKIMVNCSDFVETTREVEEQIEILEKIVPDWICKKLLASVDGITLYCVNNAIDLDSVRSRLLSNATKGDE* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4266 439 PANTHER DNA REPLICATION FACTOR CDT1 4 211 IPR045173 GO:0003677|GO:0030174|GO:0071163
Psa3g4266 439 PANTHER DNA REPLICATION FACTOR CDT1 333 432 IPR045173 GO:0003677|GO:0030174|GO:0071163
Psa3g4266 439 PANTHER DNA REPLICATION FACTOR CDT1 211 337 IPR045173 GO:0003677|GO:0030174|GO:0071163
Psa3g4266 439 CDD Cdt1_m 33 185 IPR014939 -
Psa3g4266 439 PANTHER EXPRESSED PROTEIN 4 211 - -
Psa3g4266 439 PANTHER EXPRESSED PROTEIN 211 337 - -
Psa3g4266 439 PANTHER EXPRESSED PROTEIN 333 432 - -
Psa3g4266 439 Gene3D - 342 437 IPR038090 -
Psa3g4266 439 Pfam DNA replication factor CDT1 like 52 118 IPR014939 -
Psa3g4266 439 SUPERFAMILY "Winged helix" DNA-binding domain 51 186 IPR036390 -
Psa3g4266 439 Pfam DNA replication factor Cdt1 C-terminal domain 344 401 IPR032054 -
Psa3g4266 439 SMART CDT1_2 52 184 IPR014939 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4266 344 430 Core DNA Replication Machinery Family AT2G31270 41.379 8.14e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4266 K10727 - gmx:102670055 223.402