Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4220 ATGGCACGCAAAGAACTTGCATCCTCATCTTTTCCCTCAAATTTCAACCCACCAAGCTCCAACAATGACTCCTCAGAAAACAACCATAGTATGTTTCCTACACACCCAGATAATCCTTTTTCCAAGAGGGGAGGCAACAACAAGTTCATGGTTTCTATACCACCTACCATTACCAATAACAATGATACATTGGTGATGCCACAACCATCATCTGCAGCACCATCATCTCATAGATATATGGATCTCCCTCAAGATCCATCGGAGGACGTTACCAAATCCTCCTCTAGAAAGCGAACAGGTAGACCTTTGGGCTCTAAGAACAAGCCTAAAGCACGCATCATTGTCGAGGAAGACACACAAACCCTCACAGAACTAGTAGGACTTGAGATCCCAATAGGAGAAGATATTGCGGAGAACATAATCAAATATGCTCAACGACGTCAAGCTAACATAACAGTGTCGAGGGGTTTCGGTCTTATCTCTAATGTTGTCCTTCTTGATCCAATATCTCGTGTCCCATTATTACCCATCGAAGGACCCATACATATGACAACTTTATTTGGAACATATATAAATCCAAATTGTCAATGTACTCCTACACAATTCGTAACTCATCTACCATGTTCCTCTTTTACCGTATACTTCTCTAGTCCTAACGGACATGCGTTTGGTGGAGTTCTTGGAGGAAAGATTACTGCTGCTAGTGTCATTTTCATTAATGTCACTCTTACTAGGAAAATAGCGATCCACAAGGTTGTGTCCACCAATATAAATGTTTAA 780 0.4128 MARKELASSSFPSNFNPPSSNNDSSENNHSMFPTHPDNPFSKRGGNNKFMVSIPPTITNNNDTLVMPQPSSAAPSSHRYMDLPQDPSEDVTKSSSRKRTGRPLGSKNKPKARIIVEEDTQTLTELVGLEIPIGEDIAENIIKYAQRRQANITVSRGFGLISNVVLLDPISRVPLLPIEGPIHMTTLFGTYINPNCQCTPTQFVTHLPCSSFTVYFSSPNGHAFGGVLGGKITAASVIFINVTLTRKIAIHKVVSTNINV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4220 259 CDD DUF296 128 239 IPR005175 -
Psa3g4220 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 64 253 - -
Psa3g4220 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 253 - -
Psa3g4220 259 Gene3D - 125 258 - -
Psa3g4220 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 239 IPR005175 -
Psa3g4220 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 64 253 IPR014476 GO:0003680
Psa3g4220 259 MobiDBLite consensus disorder prediction 1 44 - -
Psa3g4220 259 ProSiteProfiles PPC domain profile profile. 120 259 IPR005175 -
Psa3g4220 259 MobiDBLite consensus disorder prediction 82 96 - -
Psa3g4220 259 MobiDBLite consensus disorder prediction 58 77 - -
Psa3g4220 259 MobiDBLite consensus disorder prediction 58 109 - -
Psa3g4220 259 MobiDBLite consensus disorder prediction 7 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4220 Psa-Chr3 396326328 396327463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4220 96 239 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.767 1.65e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4220 - - cam:101498013 178.718