Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4186 ATGAAGAGAGAAAGAGAGGTTGATAGTATAACCATGGCAAATTGTTTGATGTTACTTTCTAGAGGAAGTGATCAATTTGAAGCTACTTATTCATCTACCATCACTTCAAATGATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTCTCTTCATTTCAAGCACTTGGTGGCCATAGAGCAAGTCATAAGAAACCAAGGTTGATGGGAGAGAATATTGATGGTCAATTGCTACATACACCCCCTAAACCTAAATCTCATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGGGGTCATATGAGGAGACATAGAGCTTCAAATATGAATAATTCTAATAATACTATGAGTTCTAGTAGTGGTGGTGGGGGTGGGAATAGTAGTTTTGATTCTTCACAAAAGAAGAAAGGTAGAAAGAGAGTTTTGCTTTTGGATTTGGATTTGAATTTGACTCCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGACAACTGCAAATTTGATTGATTATTTGCATTGA 540 0.3556 MKREREVDSITMANCLMLLSRGSDQFEATYSSTITSNDRVFECKTCNRQFSSFQALGGHRASHKKPRLMGENIDGQLLHTPPKPKSHECSICGLEFAIGQALGGHMRRHRASNMNNSNNTMSSSSGGGGGNSSFDSSQKKKGRKRVLLLDLDLNLTPFENDLEFLKIGKTTANLIDYLH* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4186 179 Pfam C2H2-type zinc finger 87 111 - -
Psa3g4186 179 Pfam C2H2-type zinc finger 40 66 - -
Psa3g4186 179 Gene3D Classic Zinc Finger 20 112 - -
Psa3g4186 179 PANTHER ZINC FINGER PROTEIN ZAT12 11 166 - -
Psa3g4186 179 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Psa3g4186 179 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Psa3g4186 179 MobiDBLite consensus disorder prediction 118 139 - -
Psa3g4186 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Psa3g4186 179 PANTHER ZINC FINGER PROTEIN ZAT5 11 166 - -
Psa3g4186 179 SMART c2h2final6 87 109 IPR013087 -
Psa3g4186 179 SMART c2h2final6 41 63 IPR013087 -
Psa3g4186 179 MobiDBLite consensus disorder prediction 118 136 - -
Psa3g4186 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Psa3g4186 179 SUPERFAMILY beta-beta-alpha zinc fingers 39 109 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4186 Psa-Chr3 393754673 393755612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4186 1 176 C2H2 Transcription Factor Family AT2G37430 45.946 1.04e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g4186 zf-C2H2_6 9.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4186 - - gmx:100500371 245.358