Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4172 ATGGCCGGAAAAGGAGAAGGTCCAGCTATTGGAATCGATCTCGGCACAACATACTCTTGCGTCGGCGTGTGGCAGCACGACAGAGTCGAGATCATTGCGAATGATCAAGGAAACCGTACGACGCCGTCTTATGTTGCTTTCACCGATAGTGAAAGGTTGATCGGTGATGCAGCTAAGAATCAAGTCGCCATGAACCCTATTAACACAGTCTTCGATGCAAAACGTTTGATTGGAAGGAGAGTTTCTGATGCTTCTGTTCAGAGTGATATGAAGCTTTGGCCATTCAAGGTTATTGCTGGTCCCGGTGAAAAGCCTATGATTGTGGTAAACTATAAGGGTGAGGAGAAGCAATTTGCTGCTGAGGAAATTTCCTCTATGGTGCTTATTAAGATGCGCGAGATTGCCGAGGCTTATCTTGGTTCTACTGTGAAGAATGCTGTTGTTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCTACAAAGGATGCTGGTGCCATTGCTGGTTTGAATGTGTTGAGAATAATCAATGAGCCAACTGCAGCAGCTATTGCTTATGGTCTTGACAAGAAGGCTACAAGTGTTGGTGAGAAGAATGTGTTGATTTTTGATTTGGGTGGTGGTACTTTTGATGTATCACTTCTCACTATTGAAGAGGGTATTTTTGAAGTTAAGGCCACTGCTGGTGATACCCATCTTGGTGGTGAAGATTTTGATAACAGATTGTGTATGGAGCCCGTGGAGAAGTGTTTGAGGGATGCAAAGATGGATAAGAGCACTGTTCATGAAGTTGTTCTTGTTGGTGGTTCCACTAGGATTCCCAAAGTTCAGCAGTTGTTGCAGGACTTCTTCAACGGGAAGGAGCTTTGCAAGAGTATCAACCCTGACGAGGCTGTTGCTTATGGTGCTGCTGTCCAAGCTGCTATCTTGAGTGGTGAAGGAAATGAGAAGGTTCAAGATTTGTTGCTTTTGGATGTGACCCCATTGTCTCAAGGTTTGGAGACTGCAGGAGGTGTCATGACTGTGTTGATTCCAAGGAACACAACCATCCCAACCAAGAAGGAGCAAGTTTTCTCTACCTACTCAGACAATCAACCTGGTGTCTTGATCCAAGTATATGAGGGAGAAAGAGCAAGAACCAAAGACAACAACTTGTTGGGCAAATTTGAGCTATCCGGCATTCCTCCTGCACCCCGTGGTGTTCCTCAGATTACAGTCTGCTTCGACATTGATGCTAATGGTATCTTGAATGTCTCTGCTGAGGACAAAACAACCGGGCAGAAGAACAAGATCACAATTACTAATGACAAAGGTAGACTTTCAAAGGAGGAGATTGAGAAGATGGTCGAGGAAGCAGAGAAATACAAGGCAGAAGATGAGGAACATAAGAAGAAGGTTGATGCAAAGAATGCTTTGGAAAACTATGCTTACAACATGAGGAACACAATTAAAGATGAGAAGATTGCTTCAAAGCTTTCACCCGATGACAAGAAAAAGATTGAAGATGCAATTGATGCTTCAATTACTTGGTTGGATAATAACCAATTGGCTGAAGCAGATGAGTTTGAAGATAAGATGAAGGAACTTGAGAGTCTTTGCAACCCAATAATTGCCAAGATGTACCAAGGTGGAGCTGCTCCTGACATGAGTGCAGATGATGATGAAGTTCCTCCAGCTGCAGGTGGTGCTGGTCCCAAAATTGAAGAAGTTGATTAA 1719 0.4386 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRVSDASVQSDMKLWPFKVIAGPGEKPMIVVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLCMEPVEKCLRDAKMDKSTVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSQGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVEEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLSPDDKKKIEDAIDASITWLDNNQLAEADEFEDKMKELESLCNPIIAKMYQGGAAPDMSADDDEVPPAAGGAGPKIEEVD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4172 572 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 243 - -
Psa3g4172 572 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 242 553 - -
Psa3g4172 572 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Psa3g4172 572 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 468 549 IPR029048 -
Psa3g4172 572 Gene3D - 471 544 IPR029048 -
Psa3g4172 572 Coils Coil 513 533 - -
Psa3g4172 572 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Psa3g4172 572 PRINTS 70kDa heat shock protein signature 8 21 - -
Psa3g4172 572 PRINTS 70kDa heat shock protein signature 262 278 - -
Psa3g4172 572 PRINTS 70kDa heat shock protein signature 294 314 - -
Psa3g4172 572 PRINTS 70kDa heat shock protein signature 321 340 - -
Psa3g4172 572 PRINTS 70kDa heat shock protein signature 402 418 - -
Psa3g4172 572 SUPERFAMILY Actin-like ATPase domain 198 313 IPR043129 -
Psa3g4172 572 Gene3D - 201 294 - -
Psa3g4172 572 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 317 474 IPR029047 -
Psa3g4172 572 Gene3D - 71 122 - -
Psa3g4172 572 Pfam Hsp70 protein 9 243 IPR013126 GO:0005524|GO:0140662
Psa3g4172 572 Pfam Hsp70 protein 244 543 IPR013126 GO:0005524|GO:0140662
Psa3g4172 572 MobiDBLite consensus disorder prediction 545 572 - -
Psa3g4172 572 Gene3D - 5 200 - -
Psa3g4172 572 PANTHER HEAT SHOCK PROTEIN 70KDA 242 553 IPR013126 GO:0005524|GO:0140662
Psa3g4172 572 PANTHER HEAT SHOCK PROTEIN 70KDA 1 243 IPR013126 GO:0005524|GO:0140662
Psa3g4172 572 Coils Coil 439 466 - -
Psa3g4172 572 ProSitePatterns Heat shock hsp70 proteins family signature 3. 265 279 IPR018181 -
Psa3g4172 572 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 316 470 IPR029047 -
Psa3g4172 572 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4172 Psa-Chr3 392342000 392344158 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4172 1 572 Calmodulin-binding Proteins AT5G02490 76.723 0.0 971