Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4171 ATGTTTATCAACGAGTTCATACCAACATTGGAAGGAGACCAAGGCATCTGCTATACACATCCTGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGCATTCACTTTTTTCACAGAACAATGAATGCATATAGTACTGGTCAACGAAAGCGTCGAAAGATTCAACATCATGGTTCAACTGAAGATCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTGTAATAGAAGATGGAGTACATAAGGGCTATAAGAAGATCATGGTTCTGTATATAAGATCTGAGAAAGAGTCAAAATCCTACAAATCTGACTGGAAAATGCATCAGTACCATCTTGGGAATGATGAAGATGAGAAGAATGGAGAATATGTGGTTTCAAAAATATTTTATAAACATAATGAAAAAAATGAGGAGAAACCAATGGCTGAAGAATCTGACAATATAACATCACGAACAAGTCCAAAGACTCCAAAACCAAATCCTCCAAACCCACCGCGCGCAGGAAAATGTGTTGGCAATGATGATACCATCGATGAAACTGCAGAGGATGCCAAGTCTATCCCTGTAGAATCACATGCCCCACAATCTGATACTCAGGATCAGGACAATGCAGACAACTCTGCATGGTTGGAGATTTTAGATTCATCAGCTCTATTTGATGATTTTGGATTGGACTCAATCACTCCCAATGAACTTGCTTACTATGAAAACAAAATGACAGGAAATTGTAATGTAGCTAATGAAACTTCAACTTCTGTTCTGGATACACTGGAATTGGATACTCCTCCAGATTATGATCTTTCGAATTTGACATTTTGTTCTCAAGACACTATCTAG 837 0.3847 MFINEFIPTLEGDQGICYTHPENLPGAKKDGSSIHFFHRTMNAYSTGQRKRRKIQHHGSTEDHVRWHKTGKTKAVIEDGVHKGYKKIMVLYIRSEKESKSYKSDWKMHQYHLGNDEDEKNGEYVVSKIFYKHNEKNEEKPMAEESDNITSRTSPKTPKPNPPNPPRAGKCVGNDDTIDETAEDAKSIPVESHAPQSDTQDQDNADNSAWLEILDSSALFDDFGLDSITPNELAYYENKMTGNCNVANETSTSVLDTLELDTPPDYDLSNLTFCSQDTI* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4171 278 Pfam No apical meristem (NAM) protein 4 112 IPR003441 GO:0003677|GO:0006355
Psa3g4171 278 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 277 - -
Psa3g4171 278 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 277 IPR044799 GO:0003700
Psa3g4171 278 Gene3D NAC domain 2 136 IPR036093 GO:0003677|GO:0006355
Psa3g4171 278 SUPERFAMILY NAC domain 12 131 IPR036093 GO:0003677|GO:0006355
Psa3g4171 278 MobiDBLite consensus disorder prediction 135 169 - -
Psa3g4171 278 ProSiteProfiles NAC domain profile. 1 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4171 Psa-Chr3 392245750 392249384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4171 2 131 NAC Transcription Factor Family AT4G28500 56.923 6.08e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa3g4171 NAM 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4171 - - aprc:113859476 374.015