Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4165 ATGCAAGATGTGAAAAAGCTGCAGAATCAGAAGCAGAAGCAACTTGTGAATGAGGAATCTAAGAAGAGGGGGCGTCACATTGTCATGTGGACTCAAGAGGAGGATGATGAATTGGAAGATTCTTCAAGAATTCATGGAACTAAAAATTGGGCGATAATTGCTTCTAAGTTCAAGGATAGATCACATAAACAAAACGAAAATTCAAGAGCACCATTGGCAGTTTTAGCTCAAAACTCTCATAATATCAACAACTTGCCTGATCAGAATGATGTCTACAATGTGAAGTTTGGTGGCTTTGCTCCAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATTATCCAAAGATAAACGCGTTAATGCAACAAGCCGAGCTTCTAACATCATTAGCTCTAAAAGTTGATGCGGAGAACATGGACCAAAGTCTTGGAAATGCATGGAAGATTCTTCAAGAGTTTATGAACAGAAACAAAGAGTCAGATATTCCTGGATACAAGATTCCCGATTTACAGCTCGTAGATCTTAAAGACTTATTGGAAGACTTAAAGGACAATAATGAGGAAATTCAACCATGTTGGAGGTACATGGAATTATATGAAGACTCTCCAAGCAGTTCTGAAGGATTGACTATTCTGCCTCATTCTGCTTATGAGAATTTGGAACGCTCACTACATCAAGATAATGGAACTTAA 693 0.3781 MQDVKKLQNQKQKQLVNEESKKRGRHIVMWTQEEDDELEDSSRIHGTKNWAIIASKFKDRSHKQNENSRAPLAVLAQNSHNINNLPDQNDVYNVKFGGFAPNNKIQGTFLKKDYPKINALMQQAELLTSLALKVDAENMDQSLGNAWKILQEFMNRNKESDIPGYKIPDLQLVDLKDLLEDLKDNNEEIQPCWRYMELYEDSPSSSEGLTILPHSAYENLERSLHQDNGT* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4165 230 ProSiteProfiles Myb-like domain profile. 30 64 IPR001005 -
Psa3g4165 230 CDD SANT 30 64 IPR001005 -
Psa3g4165 230 MobiDBLite consensus disorder prediction 1 27 - -
Psa3g4165 230 Pfam Myb-like DNA-binding domain 30 64 IPR001005 -
Psa3g4165 230 SUPERFAMILY Homeodomain-like 13 64 IPR009057 -
Psa3g4165 230 PANTHER TRANSCRIPTION FACTOR MYB88 10 64 - -
Psa3g4165 230 PANTHER TRANSCRIPTION FACTOR MYB88 94 217 - -
Psa3g4165 230 Gene3D - 28 68 - -
Psa3g4165 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 64 IPR017930 -
Psa3g4165 230 PANTHER MYB PROTEIN-RELATED 10 64 - -
Psa3g4165 230 PANTHER MYB PROTEIN-RELATED 94 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4165 Psa-Chr3 392026255 392027058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4165 65 212 MYB Transcription Factor Family AT1G14350 48.366 1.68e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa3g4165 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4165 K09422 - gmx:100807667 247.284