Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4163 ATGGCAACCCAAGAAACATTGCTAGACAAGCCTCGAAAATCCATTCCCAAAACATTTTGGTTTATCCTCTCTTTAGCTGCTATCATAGGCTCATCAGCCCTTATTGTTTCTCATCTCAACAAACCAACCTCCTTCTTCCACCTCTCCTCAGCTCCCAATCTGTGTGAGCATGCTCTAGATACAGAATCATGCTTAACTCATGTATCAGAAGTAGCTCAAGGCCCAACCTTGGCTAACACGAAAGACCACAAATTGAGCACACTCATATCCTTATTAACCAAGTCCACCACACACATTCGAGAAGCCATGAACAAGGCCAGTGTTATAAAAAGCCGAGTTAACAGTGGCAAAGAGGAAATTGCTTTGAATGACTGTGAGCAACTAATGAAGTTGTCCATAGAACGAGTTTGGGACTCAGTGTTGACTCTAACACAGGATAACATGGACTCACAGCAAGATGCACACACATGGCTGAGTAGTGTGCTCACCAACCATGCAACTTGTTTGGATGGATTAGAAGGTACATCTCGGATGGTTATGGAAAGTGACCTTCAGGACTTAATATCAAGAGCTAGATCTTCTCTGGCCGTGCTGGTTGCCGTTTTACCTGAAAAGAGTAATGACGGATTCATTGATGAATCATTGAACGGTGAATTTCCCTCATGGGTAACGAGTAAGGATCGAAGGCTTTTGGAGTCTTCAGTTGGGGACATAACGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGCAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGTACCTAACAAAGGTAAGACAAGGTATGTTATCTATGTGAAAAAGGGAACCTACAAAGAGAATGTTGAAATCAGTAGTCAGAAGACGAATGTGATGCTCGTGGGTGACGGTATGGATGCAACAATAATCACAGGCAGCTTGAATGTTGTTGATGGAACCGGCACCTTCCAATCTGCAACGGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGGATTCAAAAATACGGCAGGCCCAGAGAAGCACCAGGCGGTAGCTCTCCGCGTCGGTTCTGATCAGTCCGTCATCAACCGCTGTCGCATTGACGCATTTCAAGACACTCTCTATGCACACTCCAACCGACAGTTTTACCGTGATTGCTTCATTACTGGTACTATTGATTTTATCTTTGGAAATGCAGCTGCTGTGTTCCAGAAGAGCAAACTCGTGGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTCACGGCCCAAGGTCGACTAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTGACATAATACCAAGCACGGACCTCAAACCTGTCCTAGGCTCCATTAAAACATACCTAGGCCGCCCATGGAAACCCTACTCCAGGACTGTTGTGATGCAGTCCCCGATAGGCAACCACATTGACCCAACAGGATGGGCTGAATGGGATGACGCGAGTAAGGCTTTTCTCAAAACATTGTATTACGGAGAGTACTTGAACAGTGGACCGGGTGCTGGTACCGCCAAAAGAGTGAACTGGCCTGGTTATCATGTCTTAAATACTGCAGAGGCAACGAAGTTTACAGTTGCACAGCTCATCCAGGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATCGAAGGCCTGTAG 1662 0.4633 MATQETLLDKPRKSIPKTFWFILSLAAIIGSSALIVSHLNKPTSFFHLSSAPNLCEHALDTESCLTHVSEVAQGPTLANTKDHKLSTLISLLTKSTTHIREAMNKASVIKSRVNSGKEEIALNDCEQLMKLSIERVWDSVLTLTQDNMDSQQDAHTWLSSVLTNHATCLDGLEGTSRMVMESDLQDLISRARSSLAVLVAVLPEKSNDGFIDESLNGEFPSWVTSKDRRLLESSVGDITANVVVAKDGSGKFKTVAEAVASVPNKGKTRYVIYVKKGTYKENVEISSQKTNVMLVGDGMDATIITGSLNVVDGTGTFQSATVAAVGDGFIAQDIGFKNTAGPEKHQAVALRVGSDQSVINRCRIDAFQDTLYAHSNRQFYRDCFITGTIDFIFGNAAAVFQKSKLVARKPMSNQKNMVTAQGRLDPNQNTATSIQQCDIIPSTDLKPVLGSIKTYLGRPWKPYSRTVVMQSPIGNHIDPTGWAEWDDASKAFLKTLYYGEYLNSGPGAGTAKRVNWPGYHVLNTAEATKFTVAQLIQGNVWLKNTGVAFIEGL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4163 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 181 IPR006501 GO:0004857
Psa3g4163 553 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Psa3g4163 553 CDD PMEI-like_4 57 201 - -
Psa3g4163 553 PANTHER PECTINESTERASE 19 551 - -
Psa3g4163 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Psa3g4163 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 178 IPR035513 -
Psa3g4163 553 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Psa3g4163 553 SUPERFAMILY Pectin lyase-like 239 552 IPR011050 -
Psa3g4163 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Psa3g4163 553 PANTHER PECTINESTERASE 19 551 - -
Psa3g4163 553 Gene3D - 235 553 IPR012334 -
Psa3g4163 553 Pfam Plant invertase/pectin methylesterase inhibitor 53 185 IPR006501 GO:0004857
Psa3g4163 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4163 Psa-Chr3 391497150 391502696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4163 3 553 Carbohydrate Esterase AT1G11580 54.093 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4163 K01051 - gmx:100815836 829.706