Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4143 ATGCCTCGTTACTATTGTGACTATTGCGATACCTATTTGAACCACGATTCTCCATCTGTGAGAAAGCAGCATGATTCAGGTTACAAACACAAGGCAAATGTGAGGTCCTACTACCTGCAATTTAAAGAGCAACAAACACATAGTTTAATTGATCGAAGGATTAAGGAACATCTAGGGCAATCTGCACCTAGCATGGCTGCGTTTACGAAAGCGAGGGTTGCAGCTGCTAAGATTTTCCGGATAATTGATCACAAGCTTGGAATTGATAGAAACAGTGAGTCAGGATTGGAATTGGAGACAGTTAGTGGACTTGTGGAGCTGAAAAATGTCGACTTTTCTTATCCCTATAGGCCCGAGGTTGAAATCCTCAATGACTTCTCCTTGAATGTCCCTGCCGTGAAAAACCATAGCTTTAGTCGGTAG 423 0.4255 MPRYYCDYCDTYLNHDSPSVRKQHDSGYKHKANVRSYYLQFKEQQTHSLIDRRIKEHLGQSAPSMAAFTKARVAAAKIFRIIDHKLGIDRNSESGLELETVSGLVELKNVDFSYPYRPEVEILNDFSLNVPAVKNHSFSR* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4143 140 SMART ZnF_U1_5 1 37 IPR003604 GO:0003676|GO:0008270
Psa3g4143 140 Gene3D - 95 132 IPR027417 -
Psa3g4143 140 SUPERFAMILY beta-beta-alpha zinc fingers 1 55 IPR036236 -
Psa3g4143 140 ProSiteProfiles Zinc finger matrin-type profile. 4 36 IPR000690 GO:0003676|GO:0005634|GO:0008270
Psa3g4143 140 Pfam U1 zinc finger 1 38 IPR013085 GO:0008270
Psa3g4143 140 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C 1 71 - -
Psa3g4143 140 Gene3D ABC transporter type 1, transmembrane domain 58 94 IPR036640 GO:0005524|GO:0016021
Psa3g4143 140 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C 1 71 IPR017340 GO:0000387|GO:0000398|GO:0005685
Psa3g4143 140 Gene3D Classic Zinc Finger 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4143 Psa-Chr3 389178696 389179180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4143 68 138 Calmodulin-binding Proteins AT2G36910 34.722 8.09e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4143 - - gmx:100817829 132.88